Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAAAAGAAGGCTATTGGTATATGAGTACATATGTAATGGATCATTGGATTCTCATTTATATGgtaatttcttttacttgcagaccaagttctgtcatgacagagtcatgtttttgaattggtttgaacttactaaagtcattcaacatgcaatatttgtgta...

Basic information

species Glycine max
transcript GLYMA13G42760.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G42760.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv09s0002g02420.t01 (Vitis vinifera), 5'ss of exon 4
------------------------------------GATAAAAGAAGGCTATTGGTATATGAGTACATATGTAATGGATCATTGGATTCTCATTTATATGgtaatttcttttacttgcagaccaagttctgtcatgacagagtcatgtttttgaattggtttgaacttactaaagtcattcaacatgcaatatttgtgta------
                                    || | ||||||| |  |||| ||||| || ||||| ||||| ||| ||||||||||| ||||||||||||||| || ||  | |  |    |  |  |  ||  | |||  |     || |   |     ||| |||    |||    ||    |||||   ||      
CGAAATGTTGTTATGCTGATTGGGTACTGTATAGAAGACAGAAGAAGGTTGCTGGTTTATGAATATATATGCAATGGCTCACTGGATTCTCATCTATATGgtaatttctgttcctccctgtgcggaat--gctactact-aatcaaatgcacaaaatatgtcatcattaataatcggattttttat---ttatttaaataatgacc