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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTTGGATACACTGGGAATGATGATGGAAAAAAATTTGTGCTTGATGGAGAGGTGACTACTGACAAAATTAAGgtacttgttgctccctttttgcctagggttctgttaattttgctaacatgttaatgttagggaatgtgcatggatggtttatctatcacttaataaggtttgaaagcaatattttgagtaaatttctaatcttcatttttccacag

Basic information

species Glycine max
transcript GLYMA13G40130.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6567366|gb|AW234977.1|AW234977
EST:     ATGGNNNNNNNTTTGTGCTTGATGGAGAGGTGACTACTGACAAAATTAAG                         GCATTTGGGGAAGATTTCGTTGAAGACAAGCTAAAACCTTTTTACAAGTCA
genomic: ATGGAAAAAAATTTGTGCTTGATGGAGAGGTGACTACTGACAAAATTAAGgtacttgttg ... ttttccacagGCATTTGGGGAAGATTTCGTTGAAGACAAGCTAAAACCTTTTTACAAGTCA
EST: gi|192331238|gb|FK020977.1|FK020977
EST:     ATGGNNNNNNNTTTGTGCTTGATGGAGAGGTGACTACTGACAAAATTAAG                         GCATTTGGGGAAGATTTCGTTGAAGACACGCTAAAACCTTTTTACAAGTCA
genomic: ATGGAAAAAAATTTGTGCTTGATGGAGAGGTGACTACTGACAAAATTAAGgtacttgttg ... ttttccacagGCATTTGGGGAAGATTTCGTTGAAGACAAGCTAAAACCTTTTTACAAGTCA
EST: gi|192327041|gb|FK015208.1|FK015208
EST:     ATGGNNNNNNNTTTGTGCTTGATGGAGAGGTGACTACTGACAAAATTAAA                         GCATTTGGGGAAGATTTCGTTGAAGACAAGCT
genomic: ATGGAAAAAAATTTGTGCTTGATGGAGAGGTGACTACTGACAAAATTAAGgtacttgttg ... ttttccacagGCATTTGGGGAAGATTTCGTTGAAGACAAGCT
EST: gi|192331239|gb|FK020978.1|FK020978
EST:     ATGGNNNNNNNTTTGTGCTTGATGGAGAGGTGACTACTGACAAAATTAAG                         GCATTTGGGGAAGATTTCGTTGAAGACACGCTAAAACCTTTTTACAAGTCA
genomic: ATGGAAAAAAATTTGTGCTTGATGGAGAGGTGACTACTGACAAAATTAAGgtacttgttg ... ttttccacagGCATTTGGGGAAGATTTCGTTGAAGACAAGCTAAAACCTTTTTACAAGTCA
EST: gi|21285376|gb|BQ473247.1|BQ473247
EST:     ATGGNNNNNNNTTTGTGCTTGATGGAGAGGTGACTACTGACAAAATTAAG                         GCATTTGGGGAAGATTTCGTTGAAGACAAGCTAAAACCTTTTTACAAGTCA
genomic: ATGGAAAAAAATTTGTGCTTGATGGAGAGGTGACTACTGACAAAATTAAGgtacttgttg ... ttttccacagGCATTTGGGGAAGATTTCGTTGAAGACAAGCTAAAACCTTTTTACAAGTCA
EST: gi|21285317|gb|BQ473188.1|BQ473188
EST:     ATGGNNNNNNNTTTGTGCTTGATGGAGAGGTGACTACTGACAAAATTAAG                         GCATTTGGGGAAGATTTCGTTGAAGACAAGCTAAAACCTTTTTACAAGTCA
genomic: ATGGAAAAAAATTTGTGCTTGATGGAGAGGTGACTACTGACAAAATTAAGgtacttgttg ... ttttccacagGCATTTGGGGAAGATTTCGTTGAAGACAAGCTAAAACCTTTTTACAAGTCA
EST: gi|254316461|gb|GR827998.1|GR827998
EST:     ATGGNNNNNNNTTTGTGCTTGATGGAGAGGTGACTACTGACAAAATTAAG                         GCATTTGGGGAAGATTTCGTTGAAGACAAGCTAAAACCTTTTTACAAGTCA
genomic: ATGGAAAAAAATTTGTGCTTGATGGAGAGGTGACTACTGACAAAATTAAGgtacttgttg ... ttttccacagGCATTTGGGGAAGATTTCGTTGAAGACAAGCTAAAACCTTTTTACAAGTCA
EST: gi|192326874|gb|FK015131.1|FK015131
EST:     TTTGTGCTTGATGGAGAGGTGACTACTGACAAAATTAAG                         GCATTTGGGGAAGATTTCGTTGAAGACAAGCTAAAACCTTTTTACAAGTCA
genomic: TTTGTGCTTGATGGAGAGGTGACTACTGACAAAATTAAGgtacttgttg ... ttttccacagGCATTTGGGGAAGATTTCGTTGAAGACAAGCTAAAACCTTTTTACAAGTCA
EST: gi|33387977|gb|CA851184.1|CA851184
EST:     ATGGNNNNNNNTTTGTGCTTGATGGAGAGGTGACTACTGACAAAATTAAG                         GCATTTGGGGAAGATTTCGTTGAAGACAAGCTAAAACCTTTTTACAAGTCA
genomic: ATGGAAAAAAATTTGTGCTTGATGGAGAGGTGACTACTGACAAAATTAAGgtacttgttg ... ttttccacagGCATTTGGGGAAGATTTCGTTGAAGACAAGCTAAAACCTTTTTACAAGTCA
EST: gi|23731199|gb|BU763711.1|BU763711
EST:     ATGGNNNNNNNTTTGTGCTTGATGGAGAGGTGACTACTGACAAAATTAAG                         GCATTTGGGGAAGATTTCGTTGAAGACAAGCTAAAACCTTTTTACAAGTCA
genomic: ATGGAAAAAAATTTGTGCTTGATGGAGAGGTGACTACTGACAAAATTAAGgtacttgttg ... ttttccacagGCATTTGGGGAAGATTTCGTTGAAGACAAGCTAAAACCTTTTTACAAGTCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTACTTGGATACACTGGGAATGATGATGGAAAAAAATTTGTGCTTGATGGAGAGGTGACTACTGACAAAATTAAGgtacttgttgctccctttttgcctagggttctgttaattttgctaacatgttaatgttagggaatgtgcatggatggtttatctatcacttaataaggtttgaaagcaatattttgagtaaatttctaatcttcatttttccacag

- - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - -  GAGAGG