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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGTCACTTGCTCCTGCTGCTTCTCCCTCTTCCTCTCCAAACTATGGTTCAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAGgttagtctacttgcttggtgcttgcctatgatatttctgtgtaggaaattcaatgatcttaaatgactgtcggggagcaaataattttgtatgctcctgtcatatcataatgtcattctatttcataccagtgacagattattattattattatcatcatcatcatcatcttatttttgttttatggctgtctggcag

Basic information

species Glycine max
transcript GLYMA13G39120.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16344780|gb|BI970375.1|BI970375
EST:     CAGTTANNNCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAG                         GACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAA
genomic: CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAGgttagtctac ... tgtctggcagGACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAA
EST: gi|21888986|gb|BQ742199.1|BQ742199
EST:     CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAG                         GACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAA
genomic: CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAGgttagtctac ... tgtctggcagGACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAA
EST: gi|254320228|gb|GR829416.1|GR829416
EST:     CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAG                         GACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAA
genomic: CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAGgttagtctac ... tgtctggcagGACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAA
EST: gi|58017836|gb|CX704578.1|CX704578
EST:     CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAG                         GACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAA
genomic: CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAGgttagtctac ... tgtctggcagGACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAA
EST: gi|209709702|gb|BW673970.1|BW673970
EST:     CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAG                         GACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAA
genomic: CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAGgttagtctac ... tgtctggcagGACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAA
EST: gi|58021116|gb|CX707858.1|CX707858
EST:     CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAG                         GACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAA
genomic: CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAGgttagtctac ... tgtctggcagGACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAA
EST: gi|254336780|gb|GR842959.1|GR842959
EST:     CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAG                         GACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAA
genomic: CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAGgttagtctac ... tgtctggcagGACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAA
EST: gi|21993793|gb|BQ785321.1|BQ785321
EST:     CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAG                         GACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAA
genomic: CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAGgttagtctac ... tgtctggcagGACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAA
EST: gi|9902607|gb|BE611638.1|BE611638
EST:     CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAG                         GACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAA
genomic: CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAGgttagtctac ... tgtctggcagGACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAA
EST: gi|7924338|gb|AW830364.1|AW830364
EST:     CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAG                         GACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAA
genomic: CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAGgttagtctac ... tgtctggcagGACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAA
EST: gi|254336779|gb|GR842958.1|GR842958
EST:     CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAG                         GACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAA
genomic: CAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAGgttagtctac ... tgtctggcagGACAATCAATTCATTGATATGGTCTATAGAGCACTGCTGAATGCTCATCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACTGTCACTTGCTCCTGCTGCTTCTCCCTCTTCCTCTCCAAACTATGGTTCAGTTATTTCCAGAGAAAAGGTTCGAGATGCGCTTATGGTGCTTGTTCAGgttagtctacttgcttggtgcttgcctatgatatttctgtgtaggaaattcaatgatcttaaatgactgtcggggagcaaataattttgtatgctcctgtcatatcataatgtcattctatttcataccagtgacagattattattattattatcatcatcatcatcatcttatttttgttttatggctgtctggcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG