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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTCCAATATCTTTCTTACCAAGGATCATGATGTTCGCCTTGgtgagttcatatatcatatttgactactttaggtatagattatgatgatttcatcctgaattttgtctgtaatttcctgacatttatatag

Basic information

species Glycine max
transcript GLYMA13G38980.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G38980.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0009g00690.t01 (Vitis vinifera), 5'ss of exon 7
TGTTCCAATATCTTTCTTACCAAGGATCATGATGTTCGCCTTGgtgagttcatata--tcatatttgactactttaggtatagattatgatgatttcatcctgaatt--ttgtc-tgtaatttcctgacatttatatag------------------------------------------------------------------------------
|||||||| |||||||||||||| ||| | ||||| |||||||||||||  || ||  |||   |     | || |   | |  |||    |||||    ||  ||    | || |||  |||  |   |||| |                                                                                  
TGTTCCAACATCTTTCTTACCAAAGATAAGGATGTCCGCCTTGgtgagtcaatctaaatcactgtcagtgagttgaaaaaaattttacatcgattttggacttgatcaactatcatgttgttttatagaatttttcccccattttacatccatttgggactttatcagctaaatgttgtttattgatttatcttgttcatgtcttgtttgtacctag