Sequence
atgc intronic sequence ATGC exonic sequenceGAATTGTCAGCAAAGACAAAGACATACTTTGCCACTGCTGTTAACTTATGGGATGCTGACTTCTATATTAAAGTCGACGACGATGTTCATGTAAATATAGgtatttaaagtttctcaatctcaataatctaatctttaatgaggagtttgcaattgaaattgttgtattcttttaacttgttccacatgctaaccatcatccatggcttcatgttccatacatactaagtatgcatcatgtaatttctatcgaaatatttttcttagcatgtcctattcaatcctttttcag
Basic information
species | Glycine max |
transcript | GLYMA13G38500.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G38500.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os06g46570.2 (Oryza sativa), 5'ss of exon 7
GAATTGTCAGCAAAGACAAAGACATACTTTGCCACTGCTGTTAACTTATGGGATGCTGACTTCTATATTAAAGTCGACGACGATGTTCATGTAAATATAGgtatttaaagtttctcaatctcaataatctaatctttaatgaggagtttgcaattgaaattgttgtattcttttaacttgttccacatgctaaccatcatccatggcttcat-gttccatacatactaagtatgcatcatgtaatttctatcgaaatatttttcttagcatgtcctattcaatcctttttcag
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GAATTGTCTGGCAAAACCAAGACATACTTTGCTACAGCTGTTTCTTTATGGGATGCTGACTTCTATGTGAAGGTTGACGATGATGTGCATGTTAATATAGgtg----aagtcttt--gtgttgaacatctgtcctttt------------taatctgtatggttgtac------aaagtaatctatgt-ctgactgtcatgtttctttctaaagctcttaatata--------------------------------------------------------------------
upper sequence: GLYMA13G38500.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G007185_T01 (Zea mays), 5'ss of exon 7
GAATTGTCAGCAAAGACAAAGACATACTTTGCCACTGCTGTTAACTTATGGGATGCTGACTTCTATATTAAAGTCGACGACGATGTTCATGTAAATATAGgtatttaaagtttct-caatctcaataat--ctaatctttaatgaggagtttgcaattgaaattgttgtattcttttaacttgttccacatgctaaccatcatccatggcttcatgttccatacatactaagtatgcatcatgtaatttctatcgaaatatttttcttagcatgtcctattcaatcctttttcag
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GAGCTGTCAGGGAAAACCAGGACATACTTTGCAACAGCTGTTGCTTTATGGGATGCTAACTTCTATGTGAAGGTTGACGACGATGTACATGTTAATATAGgtattagatttttatgcagtgcctgttattgttgtccttttgctgccggtatgtatttcctttgataggatagttacaagtggtgccaagaacttgtttg-----------------------------------------------------------------------------------------------
upper sequence: GLYMA13G38500.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv12s0059g00640.t01 (Vitis vinifera), 5'ss of exon 7
GAATTGTCAGCAAAGACAAAGACATACTTTGCCACTGCTGTTAACTTATGGGATGCTGACTTCTATATTAAAGTCGACGACGATGTTCATGTAAATATAGgtatttaaagtttctcaatctcaataatctaatctttaatgaggagtttgcaattgaaattgttgtattcttttaacttgttccacatgctaaccatcatccatggcttcatgttccatacatactaagtatgcatcatgtaatttctatcgaaatatttttcttagcatgtcctattcaatcctttttcag
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GAACTGTCTGCCAAGACAAAGATATATTTTGCTACTGCTGTTGCTTTGTGGGATGCAGAGTTCTACATTAAAGTTGATGATGATGTCCATGTAAATATAGgtatctaa--tatgttaatctctattatgatttcttttgtg-ggtgtcatccataataatctgaaaagtcttataatttagttttcctttc--ttattttagata---------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298196082|gb|HO044473.1|HO044473EST: GGATGCTGACTTCTATATTAAAGTCGACGACGATGTTCATGTAAATATAG CGACACTGGGACAAACTCTAGTGAGACACCGATCAAAACCGCGTGTGTACA
genomic: GGATGCTGACTTCTATATTAAAGTCGACGACGATGTTCATGTAAATATAGgtatttaaag ... cctttttcagCGACACTGGGACAAACTCTAGTGAGACACCGATCAAAACCGCGTGTGTACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAATTGTCAGCAAAGACAAAGACATACTTTGCCACTGCTGTTAACTTATGGGATGCTGACTTCTATATTAAAGTCGACGACGATGTTCATGTAAATATAGgtatttaaagtttctcaatctcaataatctaatctttaatgaggagtttgcaattgaaattgttgtattcttttaacttgttccacatgctaaccatcatccatggcttcatgttccatacatactaagtatgcatcatgtaatttctatcgaaatatttttcttagcatgtcctattcaatcctttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG