Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACAAGAGGTTTGCTGGGTTTGATAAGGAGAAGAAGGAGCTTGATGCTGAGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagataagattgtatattgtacaagtcttctttattatataatgctatatttggatttttcagccatttgttagacaacctatttttttattttctgcag

Basic information

species Glycine max
transcript GLYMA13G35590.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G35580.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv00s0174g00190.t01 (Vitis vinifera), 5'ss of exon 7
CGACAAGAGGTTTGCTGGGTTTGATAAGGAGAAGAAGGAGCTTGATGCTGAGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagataagattgtatattgtacaagtcttctttattatataatgctatatttggatttttcagc--catttg-ttagacaaccta-tttttttattttctgcag-------------------------------
 ||||||||||||||||| ||    | |||    ||| | ||||||||||| ||||| ||||| ||| | |||||||| ||||||||||| ||||||| ||   ||  ||||  ||  |       | |        ||| |   || ||  ||   |  || | |||   | ||| ||||| |  | | |   | ||| |  ||||                                
TGACAAGAGGTTTGCTGGATTCAGCAGGGATGGTAAGCAACTTGATGCTGATGTTCACCGCAAGTATATCTTTGGTGGCCATGTTGCTGCATATATGACGgtgagatctaagtctgcttggatgttaggggggaaaaattgtg--attctgaatcctgcattattagcggtacttgattagagactccaatccctctatctcatgcacataatttcttacattgttgagaactatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208136512|gb|GD934110.1|GD934110
EST:     CTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: CTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|213611366|gb|DB975053.1|DB975053
EST:     AGGTTCATCGCAAATATGTTTTTGATAGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGAGGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|193715615|gb|FK651186.1|FK651186
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGAT
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGAT
EST: gi|38192902|gb|CF922108.1|CF922108
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|193650790|gb|FK600351.1|FK600351
EST:     ACATGTTGCTTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: ACATGTTGC-TGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|42722709|gb|CK768608.1|CK768608
EST:     GGTTCATCGCAAATATGTTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTTGGCAGA
genomic: GGTTCATCGCAAATATGTTTTT-GGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTT-GGCAGA
EST: gi|208087351|gb|GD887609.1|GD887609
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAAATA
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAA-TA
EST: gi|208167572|gb|GD965182.1|GD965182
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|193612781|gb|FK565486.1|FK565486
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGTTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|208089078|gb|GD886983.1|GD886983
EST:     AGGTTCATCGCAAATANGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|208337099|gb|GE137659.1|GE137659
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAA
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAA
EST: gi|207692426|gb|GD673979.1|GD673979
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|193693924|gb|FK628214.1|FK628214
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGA
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGA
EST: gi|46492780|gb|CN472336.1|CN472336
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|193317428|gb|FK282836.1|FK282836
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGA-GATAGAACCAGAGAAATA
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGAT-GAACCAGAGAAATA
EST: gi|254322422|gb|GR837836.1|GR837836
EST:     TCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: TCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|6916526|gb|AW398056.1|AW398056
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|17153260|gb|BM143193.1|BM143193
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTC
EST: gi|208299689|gb|GE097172.1|GE097172
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|192305243|gb|FG993981.1|FG993981
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGA-TAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|7590367|gb|AW706121.1|AW706121
EST:     GGTTCATCGCAAATATGTNTTTTG-TGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: GGTTCATCGCAAATATGT-TTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|5753460|gb|AI960747.1|AI960747
EST:     TGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: TGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|193519796|gb|FK475855.1|FK475855
EST:     GTTTTTGGTTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: GTTTTTGG-TGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|208213613|gb|GE010950.1|GE010950
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAA
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAA
EST: gi|208215049|gb|GE015116.1|GE015116
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|254332684|gb|GR844054.1|GR844054
EST:     AGG-TCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|193526698|gb|FK485862.1|FK485862
EST:     CGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: CGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|193480699|gb|FK448225.1|FK448225
EST:     AGGTTCATCGCAAAAATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCA
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCA
EST: gi|10231807|gb|BE800695.1|BE800695
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|14011657|gb|BG726579.1|BG726579
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|254328305|gb|GR835270.1|GR835270
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGA-GATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|6072796|gb|AW102183.1|AW102183
EST:     AGGTTCATCGCANATATGTTTNTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|193403658|gb|FK369898.1|FK369898
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAG
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAG
EST: gi|193499814|gb|FK464731.1|FK464731
EST:     AGGTTCATCGCAAATACGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAA
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAA
EST: gi|254332683|gb|GR844053.1|GR844053
EST:     AG-TTCATCGCAAATATGTTTTTGGTG-ACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAA-TACCAGTCACA
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACA
EST: gi|163921337|gb|EH039759.1|EH039759
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCNATGTGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|13312780|gb|BG406431.1|BG406431
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|23733244|gb|BU764809.1|BU764809
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|207834892|gb|GD809061.1|GD809061
EST:     CTGCCTATATGAAG                         ATCTTAGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: CTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|193414523|gb|FK377481.1|FK377481
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|20498035|gb|BQ272965.1|BQ272965
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|193388167|gb|FK353878.1|FK353878
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|208058242|gb|GD860247.1|GD860247
EST:     TTGGTGGACATGTTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: TTGGTGGACATG-TTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|254322421|gb|GR837835.1|GR837835
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|254331588|gb|GR846005.1|GR846005
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|192318939|gb|FK006835.1|FK006835
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATACGAAG                         ATCTTGGCAGAGGATGAACCAGAGAAATACCAGTCACACTTCAGCGA-TAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|38192160|gb|CF921366.1|CF921366
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|208144280|gb|GD941135.1|GD941135
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGA
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGA
EST: gi|38192978|gb|CF922184.1|CF922184
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|208121094|gb|GD920287.1|GD920287
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|208270556|gb|GE067422.1|GE067422
EST:     GGTTCATCGCAAATATGTTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: GGTTCATCGCAAATATG-TTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|208309203|gb|GE102071.1|GE102071
EST:     GGTTCATCGCAAATATGTTTT-GGTGGACATGTTGCTGCCTAATATGAAG                         ATCTTGGCAGAAGA
genomic: GGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTA-TATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGA
EST: gi|208242195|gb|GE036041.1|GE036041
EST:     AGGTTCATCGCAAATATGTTTT-GGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGA
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGA
EST: gi|15812394|gb|BI784669.1|BI784669
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|193461605|gb|FK429382.1|FK429382
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCCGCCTATATGAAG                         ATCTTGGCAGAAGA
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGA
EST: gi|254316214|gb|GR827751.1|GR827751
EST:     AGGTTCATCGCAA-TATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|31311906|gb|CD397109.1|CD397109
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCGGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|193696017|gb|FK637485.1|FK637485
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTTACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|208249064|gb|GE043679.1|GE043679
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACA
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACA
EST: gi|193531068|gb|FK484103.1|FK484103
EST:     CGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: CGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|192298911|gb|FG987656.1|FG987656
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|207780153|gb|GD753082.1|GD753082
EST:     GGTTCATCGCAAATNTGTTTTTGGTGGACATGTTGCTGCCTAATATGAAG                         ATCTTGGCAGAAGA
genomic: GGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTA-TATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGA
EST: gi|213594840|gb|DB975518.1|DB975518
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|193722621|gb|FK659185.1|FK659185
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAA
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAA
EST: gi|193471334|gb|FK438451.1|FK438451
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|207691748|gb|GD674779.1|GD674779
EST:     AGGTTCATCGCAAATATGCTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|193719832|gb|FK650412.1|FK650412
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|208134768|gb|GD929999.1|GD929999
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|193715439|gb|FK651122.1|FK651122
EST:     CGCAAATATGTTTTTGGTTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: CGCAAATATGTTTTTGG-TGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|193382185|gb|FK347566.1|FK347566
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATA
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATA
EST: gi|193529129|gb|FK484320.1|FK484320
EST:     AGGTTCATCGCAAAAATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCA
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCA
EST: gi|207721291|gb|GD703692.1|GD703692
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|193633937|gb|FK582501.1|FK582501
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|207845341|gb|GD817024.1|GD817024
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAG
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAG
EST: gi|208114744|gb|GD911263.1|GD911263
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCTGAAGATGAACCAGAGAAATACCAGT
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGT
EST: gi|254319373|gb|GR828993.1|GR828993
EST:     CATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: CATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|193662749|gb|FK604013.1|FK604013
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTTACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|193707979|gb|FK642399.1|FK642399
EST:     GGTTCATCGCAAATATGTTTT-GGTGGACATGTTAGCTGCCTATATGAAG                         ATCTTGGCAGAAGNTGAA
genomic: GGTTCATCGCAAATATGTTTTTGGTGGACATGTT-GCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAA
EST: gi|208096342|gb|GD893757.1|GD893757
EST:     CTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: CTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|208137530|gb|GD938040.1|GD938040
EST:     CCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: CCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|193675406|gb|FK616480.1|FK616480
EST:     CGCAAATANGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: CGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|209711828|gb|BW674088.1|BW674088
EST:     GACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: GACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: gi|193499344|gb|FK461223.1|FK461223
EST:     AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG                         ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAG
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGACAAGAGGTTTGCTGGGTTTGATAAGGAGAAGAAGGAGCTTGATGCTGAGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagataagattgtatattgtacaagtcttctttattatataatgctatatttggatttttcagccatttgttagacaacctatttttttattttctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC