1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CGACAAGAGGTTTGCTGGGTTTGATAAGGAGAAGAAGGAGCTTGATGCTGAGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagataagattgtatattgtacaagtcttctttattatataatgctatatttggatttttcagccatttgttagacaacctatttttttattttctgcag
species | Glycine max |
transcript | GLYMA13G35580.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGACATGTTGCTGCCTATATGAAG ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATACEST: gi|254349356|gb|GR860154.1|GR860154
genomic: GGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATACEST: gi|192320800|gb|FK013890.1|FK013890
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: GGACATGTTGCTGCCTATATGAAG ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATACEST: gi|31469251|gb|CD411279.1|CD411279
genomic: GGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATACEST: gi|31466939|gb|CD408967.1|CD408967
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: AGGTTCATCGCAAATATGTTTTTGTTGGACATGTTGCTGCCTATATGAAG ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATACEST: gi|17963769|gb|BM270514.1|BM270514
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: CTGCCTATATGAAG ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATACEST: gi|31311375|gb|CD396578.1|CD396578
genomic: CTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATACEST: gi|7926602|gb|AW832628.1|AW832628
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: AAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATACEST: gi|254328306|gb|GR835271.1|GR835271
genomic: AAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATACEST: gi|7925127|gb|AW831153.1|AW831153
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATACEST: gi|208200432|gb|GD996907.1|GD996907
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: TGTTGCTGCCTATATGAAG ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATACEST: gi|209710635|gb|BW671007.1|BW671007
genomic: TGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATACEST: gi|31471703|gb|CD413731.1|CD413731
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG ATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATACEST: gi|31475642|gb|CD417670.1|CD417670
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
EST: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAG ATCTTGNCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
genomic: AGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagata ... ttttctgcagATCTTGGCAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGCGAATAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGACAAGAGGTTTGCTGGGTTTGATAAGGAGAAGAAGGAGCTTGATGCTGAGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGgcatgagataagattgtatattgtacaagtcttctttattatataatgctatatttggatttttcagccatttgttagacaacctatttttttattttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC