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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACTATATGCCTCTCATGCCCGTACATTTTCTCTGATCAATGGTTACTCCGCTCCCTTAGAGGTTTACAAGATCTTGGAACACCATGATGCAGAAAACAgtaagtcaaacatctggtggctttgtttctgtattttatgaatggccttttttttaaaaatgtgattgaatggagtaattgggatagtttttaattattt...

Basic information

species Glycine max
transcript GLYMA13G34570.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G34570.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv19s0014g01410.t01 (Vitis vinifera), 5'ss of exon 7
ATACTATATGCCTCTCATGCCCGTACATTTTCTCTGATCAATGGTTACTCCGCTCCCTTAGAGGTTTACAAGATCTTGGAACACCATGATGCAGAAAACAgtaagtcaaacatctggtggctttgtttctgtattt--tatgaatggcc---ttttttttaaaaatgtgattgaatg----gagtaattgggatagtttttaattattt
    ||| |||||||||||| |||||||||||  || |||||||||| || ||||| || ||| ||||||||   || || |||||||| |  | |   |||      ||   ||     |||| || |  |||||   |||||    |   |  |  | |||| |||||   | |     ||  | ||| |  || | | || |    
---TTATGTGCCTCTCATGCGCGTACATTTTCAATGCTCAATGGTTATTCTGCTCCTTTGGAGATTTACAAGCATTTTGAGCACCATGAAGATGTAGGAAGTGgtgagaatcacta----cttttttaccatatttggcatgaactatcagatggtgctgaaaagtgtgacaaacttttctgaagatttgtggaaggtctcaaatga--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208258962|gb|GE055395.1|GE055395
EST:     CGCTCCCTTAGAGGTTTACAAGATCTTGGAACACCATGATGCAGAAAACA                         ATTCTGTACTTTGTGTTGGAAGTGAATGGCATCGCTTTCCATCATCA
genomic: CGCTCCCTTAGAGGTTTACAAGATCTTGGAACACCATGATGCAGAAAACAgtaagtcaaa ... tgtgttgcagATTCTGTACTTTGTGTTGGAAGTGAATGGCATCGCTTTCCATCATCA
EST: gi|19053815|gb|BM732482.1|BM732482
EST:     CGCTCCCTTAGAGGTTTACAAGATCTTGGAACACCATGATGCAGAAAACA                         ATTCTGTACTTTGTGTTGGAAGTGAATGGCATCGCTTTCCATCATCATTTT
genomic: CGCTCCCTTAGAGGTTTACAAGATCTTGGAACACCATGATGCAGAAAACAgtaagtcaaa ... tgtgttgcagATTCTGTACTTTGTGTTGGAAGTGAATGGCATCGCTTTCCATCATCATTTT
EST: gi|51342060|gb|CO983327.1|CO983327
EST:     CGCTCCCTTAGAGGTTTACAAGATCTTGGAACACCATGATGCAGAAAACA                         ATTCTGTACTTTGTGTTGGAAGTGAATGGCATCGCTTTCCATCATCATTTT
genomic: CGCTCCCTTAGAGGTTTACAAGATCTTGGAACACCATGATGCAGAAAACAgtaagtcaaa ... tgtgttgcagATTCTGTACTTTGTGTTGGAAGTGAATGGCATCGCTTTCCATCATCATTTT
EST: gi|7926538|gb|AW832564.1|AW832564
EST:     CGCTCCCTTAGAGGTTTACAAGATCTTGGAACACCATGATGCAGAAAACA                         ATTCTGTACTTTGTGTTGGAAGTGAATGGCATCGCTTTCCATCATCATTTT
genomic: CGCTCCCTTAGAGGTTTACAAGATCTTGGAACACCATGATGCAGAAAACAgtaagtcaaa ... tgtgttgcagATTCTGTACTTTGTGTTGGAAGTGAATGGCATCGCTTTCCATCATCATTTT