Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCAATTTCGCTTCTGGCCAAACAATAACAGCAGAATGTATGTTTTAGAGGGTGTCACTCCATGCATACAGTCCATGCAGTTGCAGGCTGGTGATACTGgtaagacgttgtcatgaaggtgattcatgtatcggaatatataggagtattcttcttatttacttcctgttaagtgaaactagcctcattagtcagattt...

Basic information

species Glycine max
transcript GLYMA13G31970.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G31970.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os07g37610.1 (Oryza sativa), 5'ss of exon 6
TTTCAATTTCGCTTCTGGCCAAACAATAACAGCAGAATGTATGTTTTAGAGGGTGTCACTCCATGCATACAGTCCATGCAGTTGCAGGCTGGTGATACTGgtaagacgttgtcatgaagg---tgattcatgtatcgg--aatata---taggagtattcttcttatttacttcctgttaagtgaaactagcctcattagtcagattt
|| || || ||||| ||||| || ||||||||||| |||||||| || ||||||||||| || ||||| || || |||||||| || || || ||||| ||||      |   |  || |      |  ||   |  |  ||| |    ||   |||| || |  |  || |||      |  || | | | |      |        
TTCCAGTTCCGCTTTTGGCCCAATAATAACAGCAGGATGTATGTATTGGAGGGTGTCACACCTTGCATTCAATCGATGCAGTTACAAGCAGGCGATACAGgtatatatcttctacaaaagactcagtatataagtttgctaatgtgagttaatggtatgctgcaaacctatttctaacgcatagagatttggcatgcatg--------

upper sequence: GLYMA13G31970.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G008356_T01 (Zea mays), 5'ss of exon 6
TTTCAATTTCGCTTCTGGCCAAACAATAACAGCAGAATGTATGTTTTAGAGGGTGTCACTCCATGCATACAGTCCATGCAGTTGCAGGCTGGTGATACTGgtaagacgttgtcatgaaggtgattcatgtatcggaatatataggagtattcttcttatttacttcctgttaagtgaaactagcctcattagtcagattt----
|| ||||| || ||||||||||| ||||| ||||| |||||||| || ||||||||||| || ||||| ||||| |||||||| || || || || || ||||      | |  | |     ||| ||   |   | | | |||      | |    |   |   |     || |  | ||| | ||  |  |   | ||    
TTCCAATTCCGTTTCTGGCCAAATAATAATAGCAGGATGTATGTATTGGAGGGTGTCACACCTTGCATTCAGTCAATGCAGTTACAAGCAGGCGACACAGgtacatatcttttcttagacaaattgatac-tgaaagtttgtagtgtgtctgtagcaaaacaacacaaacaaaat--atctaacttc-ctgatattacttgggg

upper sequence: GLYMA13G31970.1 (Glycine max), 5'ss of exon 7
lower sequence: AT4G21550.1 (Arabidopsis thaliana), 5'ss of exon 6
TTTCAATTTCGCTTCTGGCCAAACAATAACAGCAGAATGTATGTTTTAGAGGGTGTCACTCCATGCATACAGTCCATGCAGTTGCAGGCTGGTGATACTGgtaagacgtt-gtcatgaaggtgattcatgtatcggaatatataggagtattcttcttatttacttcctgttaagtgaaactagcctcattagtcag-attt
||||| |||||||| ||||| | ||  ||  ||||||| |||||| ||||||| || ||||||| ||||||| || |||||||||||||||||||||| ||||   |||| || ||  ||    ||  | ||  |||||||||        |  |   |||| ||        | |   |   |  | ||  |  || |  |
TTTCAGTTTCGCTTTTGGCCCAGCAGCAAAGGCAGAATATATGTTCTAGAGGGAGTAACTCCATTCATACAGACCTTGCAGTTGCAGGCTGGTGATACAGgtatatcgtttgtgatatagtaatttggtttacaggaatatatgttttatgtagtagcatttgctgttcac--aattccatatgtttaatgcggaagcaact

upper sequence: GLYMA13G31970.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv00s0181g00260.t01 (Vitis vinifera), 5'ss of exon 7
TTTCAATTTCGCTTCTGGCCAAACAATAACAGCAGAATGTATGTTTTAGAGGGTGTCACTCCATGCATACAGTCCATGCAGTTGCAGGCTGGTGATACTGgtaagacgttgtcatgaaggtgattcatgtatcggaatatatag--gagtattcttcttatttacttcctgttaagtgaaactagcctcattagtcagattt----
||||| ||||| || ||||| || ||||||||||||||||||||||||||||| || ||||| || |||||||| ||||| || || || ||||| || |||||    |       ||       || | ||| |||  |||      | |    | |||| | |||  |||||||  |  |      | | | | || |      
TTTCAGTTTCGATTTTGGCCCAATAATAACAGCAGAATGTATGTTTTAGAGGGAGTTACTCCTTGTATACAGTCGATGCAATTACAAGCAGGTGACACAGgtaaccattcactggaaaaa-----caggcatctgaagttatcatcatgcagatattttatct-ctttatgttaagcaatgccttttccttgatttagttggggta

upper sequence: GLYMA13G31970.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S31_242V6.1 (Physcomitrella patens), 5'ss of exon 7
TTTCAATTTCGCTTCTGGCCAAACAATAACAGCAGAATGTATGTTTTAGAGGGTGTCACTCCATGCATACAGTCCATGCAGTTGCAGGCTGGTGATACTGgtaagacgttgtcatgaaggtgattcatgtatcggaatatataggagtattcttcttatttacttcctgttaagtgaaactagcctcattagtcagattt------------------------------------------------------------------------
|| || |||||||||||||| |||||||||||| ||||||||||  | || |||||||| |||||||| || || ||| || | || || || ||||| |||     |||| ||||    |  ||| | | |         |     | || || ||| || | | || ||| || |||      || | |||   |                                                                           
TTCCAGTTTCGCTTCTGGCCCAACAATAACAGCCGAATGTATGTGCTTGAAGGTGTCACCCCATGCATTCAATCGATGAAGCTTCATGCAGGGGATACAGgt-----gttgacatgtcaatttttcttctcttttttatcttttttattttatttttacttgccttctatta-gtaaaagggatttc-tgagtacaacccttacttcaacttatttttggcttgcaatcttgaattaaagttctgaatcctgaaatatttgagttgttccag