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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTATATTGAGAAAGAGGATAGTAAGAAGCTGAAACAAAAGCAAAGGGAGCGCATGCAACCAAAAATGGGGAAAATGGATATAGATTATCAGgtttcatttgtgtttgcctttggttttgcaccatttgcattgcttgcttggtttttgtttactctagtttcagaactattctcatccttagttctttttattggttgccag

Basic information

species Glycine max
transcript GLYMA13G31550.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G31550.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os02g58090.1 (Oryza sativa), 5'ss of exon 7
GCTTATATTGAGAAAGAGGATAGTAAGAAGCTGAAACAAAAGCAAAGGGAGCGCATGCAACCAAAAATGGGGAAAATGGATATAGATTATCAGgtttcatttgtgtttgcctttggttttgcaccatttgcattgcttgcttggtttttgtttactctagtttcagaactattctcatccttagttctttttattggttgccag
|| ||||||||||| ||||||||||| ||| |||||||||||||  ||||||| ||||||||||||||||| || ||||||||||||||||||||   | ||   |     | |   |    | |||||| || |  |      || ||||  || |   |||    ||| ||    ||||||        |  |  |      
GCATATATTGAGAAGGAGGATAGTAAAAAGTTGAAACAAAAGCAGCGGGAGCGTATGCAACCAAAAATGGGCAAGATGGATATAGATTATCAGgtaaaaatttactcctattgtctatagagatcatttg-atggtatcaacatttattgtaaacacacattttcatactctt----tccttaagctcaagttctaat------

upper sequence: GLYMA13G31550.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G121354_T01 (Zea mays), 5'ss of exon 3
GCTTATATTGAGAAAGAGGATAGTAAGAAGCTGAAACAAAAGCAAAGGGAGCGCATGCAACCAAAAATGGGGAAAATGGATATAGATTATCAGgtttcatttgtgtttgcctttggttttgcaccatttgcattgcttgcttggtttttgtttactctagtttcagaactattctcatccttagttctttttattggttgccag
|| |||||||||||||||||||| |||||| ||||||| || ||  ||||||||||||| || |||||||| |||||||||||||||||||||||   |  | | |   ||    || |   |     ||    | |   |||| || ||  | || ||||   || || ||   ||  |  |  |||  ||  |  ||     
GCGTATATTGAGAAAGAGGATAGCAAGAAGTTGAAACAGAAACAGCGGGAGCGCATGCAGCCCAAAATGGGCAAAATGGATATAGATTATCAGgtaa-acctttttccacccacagtgtgaaa-----tgtgaagttgtattggcttgtgcat-ctatagtagtagcaccatgagcaaacacatgtctactttgtacttt----

upper sequence: GLYMA13G31550.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G132060_T01 (Zea mays), 5'ss of exon 6
GCTTATATTGAGAAAGAGGATAGTAAGAAGCTGAAACAAAAGCAAAGGGAGCGCATGCAACCAAAAATGGGGAAAATGGATATAGATTATCAGgtttcatttgtgtttgcctttggttttgcaccatttgcattgcttgcttggtttttgtttactctagtttcagaactattctcatccttagttctttttattggttgccag
||||||||||||||||||||||| |||||| ||||||| || ||  | ||||| ||||| || || ||||| |||||||||||||||||||||||    |         |||||       ||     || | ||  ||   || |  |  |    | |    ||||  ||||   |        | | ||  || ||      
GCTTATATTGAGAAAGAGGATAGCAAGAAGTTGAAACAGAAACAGCGTGAGCGTATGCAGCCCAAGATGGGCAAAATGGATATAGATTATCAGgtagact---------cctttccacccacaaagcgtgaaatg--tgaaagggtagtagtaggaccatgagcagacatatttctacttagtactttcttccttagtcatata

upper sequence: GLYMA13G31550.2 (Glycine max), 5'ss of exon 7
lower sequence: AT4G21660.1 (Arabidopsis thaliana), 5'ss of exon 6
GCTTATATTGAGAAAGAGGATAGTAAGAAGCTGAAACAAAAGCAAAGGGAGCGCATGCAACCAAAAATGGGGAAAATGGATATAGATTATCAGgtttcatttgtgtttgcctttggttttgcaccatttgcattgcttgcttggtttttgtttactctagtttcagaactattctcatccttagttctttttattggttgccag
||||| ||||||||||| ||| |||||||  |||| ||||||||| ||||| | ||||||||||||||||| || ||||| || || || ||||||||  || | |||    || ||||||          | |  ||||| | | | ||||  || ||  |  | || |      || |||   | | |              
GCTTACATTGAGAAAGAAGATGGTAAGAAATTGAAGCAAAAGCAACGGGAGAGAATGCAACCAAAAATGGGAAAGATGGACATTGACTACCAGgtttctattttttttaatctttgttttgtgatg-----agtatttgct-gatatctgtt--ctataactg-acaagtgaagctattctttcctttctcag-----------

upper sequence: GLYMA13G31550.2 (Glycine max), 5'ss of exon 7
lower sequence: PP1S505_13V6.1 (Physcomitrella patens), 5'ss of exon 7
GCTTATATTGAGAAAGAGGATAGTAAGAAGCTGAAACAAAAGCAAAGGGAGCGCATGCAACCAAAAATGGGGAAAATGGATATAGATTATCAGgtttcatttgtgtttgcctttggttttg---caccatttgcattgct--tgcttggtttttgtttactctagtttcagaactattctcatccttag--ttctttttattggttgccag----------------------
||||||||||| || || || || |||||||| || |||||||| |||||    ||||| ||||| |||||||| ||||| ||||||||||||||   || ||  |  || || ||  |||       | | | || |||  || |||||   |   | || ||   ||| |         ||||  ||  |     |  |||||    |                       
GCTTATATTGAAAAGGAAGACAGCAAGAAGCTTAAGCAAAAGCAGAGGGAAAAGATGCAGCCAAAGATGGGGAAGATGGACATAGATTATCAGgta--atgtgcttaagctttcggaattgatgtggaaatgggatggctcttgtttggtgcattcgtccttta-catcaaagtagagtatatccagagagtcgaagtagttggtgtttaagtttatgtcctgtactttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24136279|gb|BU926789.1|BU926789
EST:     AAAGGGAGCGCATGCAACCAAAAATGGGGAAAATGGATATAGATTATCAG                         GTTCTTCATGATGCATTCTTTAAATACCAAACAAAGCCTAAACTGACCTCT
genomic: AAAGGGAGCGCATGCAACCAAAAATGGGGAAAATGGATATAGATTATCAGgtttcatttg ... tggttgccagGTTCTTCATGATGCATTCTTTAAATACCAAACAAAGCCTAAACTGACCTCT
EST: gi|7234841|gb|AW570174.1|AW570174
EST:     GAAGGGAGCGCATGCAACCAAAAATGGGGAAAATGGATATAGATTATCAG                         GTTCTTCATGATGCATTCTTTAAATACCAAACAAAGCCTAAACTGACCTCT
genomic: AAAGGGAGCGCATGCAACCAAAAATGGGGAAAATGGATATAGATTATCAGgtttcatttg ... tggttgccagGTTCTTCATGATGCATTCTTTAAATACCAAACAAAGCCTAAACTGACCTCT
EST: gi|23725417|gb|BU760662.1|BU760662
EST:     AAAGGGAGCGCATGCAACCAAAAATGGGGAAAATGGATATAGATTATCAG                         GTTCTTCATGATGCATTCTTTAAATACCAAACAAAGCCTAAACTGACCTCT
genomic: AAAGGGAGCGCATGCAACCAAAAATGGGGAAAATGGATATAGATTATCAGgtttcatttg ... tggttgccagGTTCTTCATGATGCATTCTTTAAATACCAAACAAAGCCTAAACTGACCTCT