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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATTAGACATTTTGATGGTTGCAAGGCTGACCTGGTTGTGTGTGATGGTGCTCCTGATGgtaaagaatgctcaatttaacttgataatctcttcatacaccatattagagaagtgcaatttcacacgaaaattatttttatgaaaagctgcataagaag...

Basic information

species Glycine max
transcript GLYMA13G31380.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G31380.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os06g49140.1 (Oryza sativa), 5'ss of exon 6
GTCATTAGACATTTTGATGGTTGCAAGGCTGACCTGGTTGTGTGTGATGGTGCTCCTGATGgtaa-agaatgctcaatttaacttgataatctcttcatacaccatattagagaagtgcaatttcacacgaaaattat-ttttatgaaaagctgcataagaag
|| ||||| ||||||||||| ||||| || ||  ||||||| || |||||||||||||||||||| | | || |     | |||||  |  |  || ||  |    ||||||  |     || |  || |   ||||| |  | ||      | ||       
GTTATTAGGCATTTTGATGGATGCAAAGCAGATTTGGTTGTCTGCGATGGTGCTCCTGATGgtaagatagtgatgtcccttacttg-catcccatttatttatggcattagactacatgtatgtttcatgcttattatgtgctttgggttattacag------

upper sequence: GLYMA13G31380.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G083745_T03 (Zea mays), 5'ss of exon 6
GTCATTAGACATTTTGATGGTTGCAAGGCTGACCTGGTTGTGTGTGATGGTGCTCCTGATGgtaaagaatgc--tcaatttaacttgataatctcttcatacaccatattagagaagtgcaatttcacacgaaaattatttttatgaaaagctgcataagaag
|||||||| ||||||||||| ||||| || ||| ||||||| || ||||| || || ||||||||   ||    ||| |  ||     |    | ||  | ||   | |   |  ||||    || ||| ||  |||  | || ||     || ||       
GTCATTAGGCATTTTGATGGATGCAAAGCAGACTTGGTTGTTTGCGATGGAGCCCCGGATGgtaagatatcatatcagtgcaagagacttggttgttt-tgcaatttttatcactagtgaggatt-acatgattattgctcttttgggtgactacag------

upper sequence: GLYMA13G31380.1 (Glycine max), 5'ss of exon 7
lower sequence: AT5G01230.1 (Arabidopsis thaliana), 5'ss of exon 7
GTCATTAGACATTTTGATGGTTGCAAGGCTGACCTGGTTGTGTGTGATGGTGCTCCTGATGgtaaagaatgctcaatttaacttgataatctcttcatacaccatattagagaagtgcaatttcacacgaaaattatttttatgaaaagctgcataagaag
||||||||||| ||||| || ||||| || ||||||||||| |||||||||||||| ||||||||  ||   |  ||  ||  ||    ||||  | | ||  ||||         |  ||   | |  ||||    |||||  |   | |    |     
GTCATTAGACACTTTGACGGCTGCAAAGCGGACCTGGTTGTCTGTGATGGTGCTCCAGATGgtaa--aacagtagat--aaagtgtctgtctcgccgttcaatatat-------acgttatgctata-aaaaacgccttttacaatttggtttgcag----

upper sequence: GLYMA13G31380.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0007g01960.t01 (Vitis vinifera), 5'ss of exon 6
GTCATTAGACATTTTGATGGTTGCAAGGCTGACCTGGTTGTGTGTGATGGTGCTCCTGATGgtaaagaa-----tgctcaatttaacttgataatctcttcatacacca-tattag-agaagtgcaattt-cacacgaaaatta-tttttatgaaaagctgcataagaag
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| | | |     |  |   || ||||| ||  | | | | |       ||  || ||  ||    ||| |  | |   || | ||| | |||  |  ||||       
GTCATTAGGCATTTTGATGGATGCAAGGCTGACCTGGTTGTGTGTGATGGTGCTCCTGATGgttaggcaacatatattgttttcaacttcatggtttatgcttctgtttctaccagcagtggtttgtttttcttaagttgatcagtttctgtgatgatttgcag------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401979|gb|EV271792.1|EV271792
EST:     TTTTGATGGTTGCAAG-CTGACCTGGTTGTGTGTGATG-TGCTCCTGATG                         TTACTGGCCT-CATGACATGGATGAGTTTGTACA-TCCCA-CTCA
genomic: TTTTGATGGTTGCAAGGCTGACCTGGTTGTGTGTGATGGTGCTCCTGATGgtaaagaatg ... ttttttgcagTTACTGGCCTTCATGACATGGATGAGTTTGTACAATCCCAACTCA