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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTATGATGGATATGGCTCATATAAGTGGGCTTGTTGCTGCATCTGTACTTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAGgtttgccttgagatatttttatgtcaaactttgtacttttgcattcacaatgaaagagagaagaattcacatttatttttgtacaaacttaaggctatgttaacttgaaactctgaagtaaatacttttctttgctatacttgacacttagatattttcttccag

Basic information

species Glycine max
transcript GLYMA13G29410.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G29410.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0008g00770.t01 (Vitis vinifera), 5'ss of exon 6
TCTTATGATGGATATGGCTCATATAAGTGGGCTTGTTGCTGCATCTGTACTTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAGgtttgccttgagatatttttatgtcaaactttgtacttt-tgcattcacaatgaaagagagaagaattcacatttatttttgtacaaacttaaggctatgttaacttgaaactctgaagtaaatacttttctttgctatacttgacacttagatattttcttccag
||| ||||||||||||||||| || ||||| ||||||||||| |||||  || || | ||||||||||| |||||||||||||| || ||||| ||||||||     ||||   || || | ||   | ||||||||   | ||| | || |    | |  ||   |    ||  ||  ||||       | |   ||| || | |                                                            
TCTCATGATGGATATGGCTCACATTAGTGGACTTGTTGCTGCTTCTGTGGTTGCTGACCCCTTTGAGTACTGTGATATTGTGACAACAACAACACACAAGgtacaaattgaacaatcttgaagtt--attttgtactaggttcatcctcattt---gtgccaatgctgtgtatc-atacttgtggttttcttaacttattttgatt------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18039880|gb|BM308174.1|BM308174
EST:     TTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAG                         TCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAG
genomic: TTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAGgtttgccttg ... tttcttccagTCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAG
EST: gi|254335574|gb|GR847102.1|GR847102
EST:     TTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAG                         TCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAGAAAGATACTGTG
genomic: TTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAGgtttgccttg ... tttcttccagTCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAGAAAGATACTGTG
EST: gi|298195468|gb|HO043859.1|HO043859
EST:     TTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAG                         TCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAGAAAGATACTGTG
genomic: TTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAGgtttgccttg ... tttcttccagTCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAGAAAGATACTGTG
EST: gi|298190143|gb|HO032264.1|HO032264
EST:     TTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAG                         TCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCA
genomic: TTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAGgtttgccttg ... tttcttccagTCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCA