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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTATGATGGATATGGCTCATATAAGTGGGCTTGTTGCTGCATCTGTACTTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAGgtttgccttgagatatttttatgtcaaactttgtacttttgcattcacaatgaaagagagaagaattcacatttatttttgtacaaacttaaggctatgttaacttgaaactctgaagtaaatacttttctttgctatacttgacacttagatattttcttccag

Basic information

species Glycine max
transcript GLYMA13G29410.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G29410.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0008g00770.t01 (Vitis vinifera), 5'ss of exon 6
TCTTATGATGGATATGGCTCATATAAGTGGGCTTGTTGCTGCATCTGTACTTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAGgtttgccttgagatatttttatgtcaaactttgtacttt-tgcattcacaatgaaagagagaagaattcacatttatttttgtacaaacttaaggctatgttaacttgaaactctgaagtaaatacttttctttgctatacttgacacttagatattttcttccag
||| ||||||||||||||||| || ||||| ||||||||||| |||||  || || | ||||||||||| |||||||||||||| || ||||| ||||||||     ||||   || || | ||   | ||||||||   | ||| | || |    | |  ||   |    ||  ||  ||||       | |   ||| || | |                                                            
TCTCATGATGGATATGGCTCACATTAGTGGACTTGTTGCTGCTTCTGTGGTTGCTGACCCCTTTGAGTACTGTGATATTGTGACAACAACAACACACAAGgtacaaattgaacaatcttgaagtt--attttgtactaggttcatcctcattt---gtgccaatgctgtgtatc-atacttgtggttttcttaacttattttgatt------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58018378|gb|CX705120.1|CX705120
EST:     TTCTAATCCCTTTGAGTATTGTGATATTGTGA-CACCCACACCCCACAAG                         TCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAGAAAGATACTGTG
genomic: TTCTAATCCCTTTGAGTATTGTGATATTGTGACCA-CCACAACCCACAAGgtttgccttg ... tttcttccagTCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAGAAAGATACTGTG
EST: gi|254333982|gb|GR848900.1|GR848900
EST:     CCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAG                         TCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAGAAAGATACTGTG
genomic: CCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAGgtttgccttg ... tttcttccagTCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAGAAAGATACTGTG
EST: gi|298170634|gb|HO019258.1|HO019258
EST:     TTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAG                         TCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAGAAAGATACTGTG
genomic: TTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAGgtttgccttg ... tttcttccagTCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAGAAAGATACTGTG
EST: gi|18039880|gb|BM308174.1|BM308174
EST:     TTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAG                         TCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAG
genomic: TTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAGgtttgccttg ... tttcttccagTCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAG
EST: gi|7591183|gb|AW706921.1|AW706921
EST:     TTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAG                         TCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAGAAAGATACTGTG
genomic: TTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAGgtttgccttg ... tttcttccagTCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAGAAAGATACTGTG
EST: gi|58023902|gb|CX710643.1|CX710643
EST:     TTTCTAATCCCTCTGAGTATTGTGATATTGTGACCACCACAACCCACAAG                         TCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAGAAAGATACTGTG
genomic: TTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAGgtttgccttg ... tttcttccagTCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAGAAAGATACTGTG
EST: gi|254335574|gb|GR847102.1|GR847102
EST:     TTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAG                         TCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAGAAAGATACTGTG
genomic: TTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAGgtttgccttg ... tttcttccagTCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAGAAAGATACTGTG
EST: gi|18735429|gb|BM528760.1|BM528760
EST:     TTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAG                         TCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAGAAAGATACTGTG
genomic: TTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAGgtttgccttg ... tttcttccagTCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAGAAAGATACTGTG
EST: gi|298195468|gb|HO043859.1|HO043859
EST:     TTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAG                         TCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAGAAAGATACTGTG
genomic: TTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAGgtttgccttg ... tttcttccagTCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAGAAAGATACTGTG
EST: gi|254346462|gb|GR856184.1|GR856184
EST:     TTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAG                         TCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAGAAAGATACTGTG
genomic: TTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAGgtttgccttg ... tttcttccagTCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAGAAAGATACTGTG
EST: gi|298190143|gb|HO032264.1|HO032264
EST:     TTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAG                         TCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCA
genomic: TTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAGgtttgccttg ... tttcttccagTCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCA
EST: gi|5127019|gb|AI748755.1|AI748755
EST:     TTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCAACAAG                         TCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAGAAAGATACTGT
genomic: TTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCC-ACAAGgtttgccttg ... tttcttccagTCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAGAAAGATACTGT
EST: gi|298186489|gb|HO037122.1|HO037122
EST:     TTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAG                         TCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAGAAAGATACTGTG
genomic: TTTCTAATCCCTTTGAGTATTGTGATATTGTGACCACCACAACCCACAAGgtttgccttg ... tttcttccagTCTTTACGAGGTCCAAGAGGTGGTATGATATTCTTCAAGAAAGATACTGTG