Sequence
atgc intronic sequence ATGC exonic sequenceTGAAGCTCATCGAATCAAGAATGAGAATTCCTTGCTGTCCAAAACAATGAGGCTCTACAGTACAAACTATCGTCTCCTTATTACTGGCACACCACTTCAGgtatgacttgttgtattatccataatgatgtagtcacctgaagaatggaggtggtgtatactaataaacatggaggtggtgtgatgccaattttgtcaat...
Basic information
species | Glycine max |
transcript | GLYMA13G28720.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G28720.1 (Glycine max), 5'ss of exon 7
lower sequence: 13113.m00246 (Oryza sativa), 5'ss of exon 7
TGAAGCTCATCGAATCAAGAATGAGAATTCCTTGCTGTCCAAAACAATGAGGCTCTACAGTACAAACTATCGTCTCCTTATTACTGGCACACCACTTCAGgtatgactt-----gttgtattatccataatga-tgtagtca---cctgaagaatggaggtggtgtatactaat-aaacatggaggtggtgtgatgccaat--tttgtcaat--------------------
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TGAAGCACATCGCATAAAAAATGAGAATTCTCTTCTGTCCAAGACAATGAGGATTTATAATACTAATTATCGTCTCCTTATCACAGGCACACCACTCCAGgtaggtctcccctggctgtgctctttttttggactgtagccatggtcaaagtaattatgttggtttacattcctcaagcatttttttgcttttattctgataattcgttgatgctatgattgatgtttgcag
upper sequence: GLYMA13G28720.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g27040.1 (Oryza sativa), 5'ss of exon 7
TGAAGCTCATCGAATCAAGAATGAGAATTCCTTGCTGTCCAAAACAATGAGGCTCTACAGTACAAACTATCGTCTCCTTATTACTGGCACACCACTTCAGgtatgactt-----gttgtattatccataatga-tgtagtcac---ctgaagaatggaggtggtgtatactaataaacatggaggtggtgtgatgccaat--tttgtcaat--------------------
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TGAAGCACATCGCATAAAAAATGAGAATTCTCTTCTGTCCAAGACAATGAGGATTTATAATACTAATTATCGTCTCCTTATCACAGGCACACCACTCCAGgtaggtctcccctggctgtgctctttttttggactgtagccatggtcaaagtaattatgttggtttacatcctcaagcatttttttgcttttattctgataattcgttgatgctatgattgatgtttgcag
upper sequence: GLYMA13G28720.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 7
TGAAGCTCATCGAATCAAGAATGAGAATTCCTTGCTGTCCAAAACAATGAGGCTCTACAGTACAAACTATCGTCTCCTTATTACTGGCACACCACTTCAGgtatgacttgttgtattatccataatg-atgtagtcacctgaagaatggaggtggtgtatacta-ataaacatggaggtggtgtgatgccaattttgtcaat
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TGAAGCTCATCGAATCAAGAATGAGAATTCTCTTCTTTCAAAGACAATGAGACTATATAGTACGAACTACCGCCTTCTTATCACGGGTACACCACTTCAGgtactaattaa-atataaaaaaacatatatatttttcattggcataggaatttgtcgaattttctgtcattccaaatctggtatgaggattacttt-taaatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207748967|gb|GD718088.1|GD718088EST: GGCTCTACAGTACAAACTATCGTCTCCTTATTACTGGCACACCACTTCAG AATAATCTTCATGAACTCTGGTCTCTTCTCAAACTTTACTTCTGCCCGAAA
genomic: GGCTCTACAGTACAAACTATCGTCTCCTTATTACTGGCACACCACTTCAGgtatgacttg ... aatggcacagAATAATCTTCATGAACTCTGGTCTCTTCTCAA-CTTT-CTTCTGCCCGAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAAGCTCATCGAATCAAGAATGAGAATTCCTTGCTGTCCAAAACAATGAGGCTCTACAGTACAAACTATCGTCTCCTTATTACTGGCACACCACTTCAGgtatgacttgttgtattatccataatgatgtagtcacctgaagaatggaggtggtgtatactaataaacatggaggtggtgtgatgccaattttgtcaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaggtgg