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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGATGATCACAGAAAGAAAGGAATCAATATTCCCACCGAAAAAGAGTTTCGAGGCTATTATGCTCTTCTTAAACTGGATAAGCACCCTGGTTACAAAgtaagtagcctttgtagtgctttgatttatatggctttattcacttcaaaaaaaccaaggaactaagcaagtcatactag

Basic information

species Glycine max
transcript GLYMA13G28300.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G28300.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G06290.1 (Arabidopsis thaliana), 5'ss of exon 13
GTATGATGATCACAGAAAGAAAGGAATCAATATTCCCACCGAAAAAGAGTTTCGAGGCTATTATGCTCTTCTTAAACTGGATAAGCACCCTGGTTACAAAgtaagtagcctttgtagtgctttgatttatatggctttattcacttcaaaaaaaccaaggaactaagcaagtcatactag
||||||||||||||| ||||||||||| | | |||| || |||||||||||||| ||||||||||| ||||| ||||| || ||||| ||||| || || ||||||     | |  |   ||  | | | |    | |  | | |||  ||    |  |  | |||     || |  |||
GTATGATGATCACAGGAAGAAAGGAATAACTGTTCCTACAGAAAAAGAGTTTCGTGGCTATTATGCCCTTCTCAAACTCGACAAGCATCCTGGCTATAAGgtaagtccttctgggtgaatttgcagtcagaattgtgtgctaagttcttaa----cccgacaataaattcttcttgttag

upper sequence: GLYMA13G28300.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv05s0020g02350.t01 (Vitis vinifera), 5'ss of exon 8
GTATGATGATCACAGAAAGAAAGGAATCAATATTCCCACCGAAAAAGAGTTTCGAGGCTATTATGCTCTTCTTAAACTGGATAAGCACCCTGGTTACAAAgtaagtagcc--tttgtagtgctttgatttatatggctttattcacttcaaaaaaaccaaggaactaagcaagtcatactag
|||||||||||| |||||||| ||||| | | | || || ||||||||||| || ||||||||||| |||||||| ||||| ||||||||||| ||||||||||||      ||  |   |  || |||  ||| | |||  |  || |         |   |  ||||||  |  || |||
GTATGATGATCATAGAAAGAAGGGAATAATTGTGCCAACAGAAAAAGAGTTCCGTGGCTATTATGCACTTCTTAAGCTGGACAAGCACCCTGGGTACAAAgtaagttattggttattgacggcttaatt-gtataggttttgtttctgctgttgt-ttattaagataagcagtttttattag