Sequence
atgc intronic sequence ATGC exonic sequenceATGTACGAGAGCTTATATACCGAGAGATTCTGGAGTATCATCCAAAGATGTTGAAGGAATTTCTAGAGGGATCAGAGCCAACAGGTTTCATGTATCCAAGgtattgtctaaatctctatccaaatttctgttttgcacctcattagcacttcatgaacaacatatttgggggttggtttcacttgatattgttgcctaac...
Basic information
species | Glycine max |
transcript | GLYMA13G28120.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G28120.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os05g05160.1 (Oryza sativa), 5'ss of exon 7
ATGTACGAGAGCTTATATACCGAGAGATTCTGGAGTATCATCCAAAGATGTTGAAGGAATTTCTAGAGGGATCAGAGCCAACAGGTTTCATGTATCCAAGgtat-----tgt-ctaaatctctatccaaatttctgttttgcacctcattagcacttcatgaacaacata-tttgggggttggtttcacttgatattgttgcctaac
|| || | || || ||||| |||| |||||||||||||||||||||||| ||| ||| || || |||||| | ||| | || ||||||||||| ||||||| | | | || | | | | | || ||| | | | | | ||| ||| | | ||| |||| || |||
ATATAAGGGAACTCATATATAGAGAAATTCTGGAGTATCATCCAAAGATGCTGAGGGAGTTCCTTGAGGGAACTGAGTCCACTGGTTTCATGTACCCAAGgtgtgtagtcatgccaagtttatttttattccattgctttaaaatcttcaactgagttgttcctattataatttctgagacaatttag--tgatcttattgt-----
upper sequence: GLYMA13G28120.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os11g17080.1 (Oryza sativa), 5'ss of exon 7
ATGTACGAGAGCTTATATACCGAGAGATTCTGGAGTATCATCCAAAGATGTTGAAGGAATTTCTAGAGGGATCAGAGCCAACAGGTTTCATGTATCCAAGgtattgtctaaatctctatccaaatttctgttttgcacctcattagcacttcatgaacaacatatttgggggttggtttcacttgatattgttgcctaac---------
|| || | || || || || |||| |||||||||||||||||||| ||||||| ||||| || || || | ||| || | ||||||||||| || |||| | || | || | | | || || | || | ||||| || || | | | ||| | |||||| | ||
ATATAAGGGAACTCATCTATAGAGATATTCTGGAGTATCATCCAAATATGTTGAGGGAATACCTTGAAGGGACTGAGTCAGCTGGTTTCATGTACCCTAGgtgcgat---gatttttaactacaaca-tgcttcaccaaagtgaagtgcctcatg-----caatttcagagtataatttaatggttgattgtttgcagacagaccaggt
upper sequence: GLYMA13G28120.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G017351_T01 (Zea mays), 5'ss of exon 6
ATGTACGAGAGCTTATATACCGAGAGATTCTGGAGTATCATCCAAAGATGTTGAAGGAATTTCTAGAGGGATCAGAGCCAACAGGTTTCATGTATCCAAGgtat-tgtctaaatctctatccaaatttctgttttgcacctcattagcacttcatgaacaacatatttggggg----ttggtttcacttgatat---tgttgcctaac
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ACATAAGGGAACTTATATATAGAGAAATTCTTGAGTATCATCCAAAGATGTTGAAAGAATTTATTGAGGGAACTGAGTCAAGTGGTTTCATGTACCCAAGgtgtgtacctatgttgctgttttcatt---atttaacatcttttgaccgaaaagtgccaaatttagtccgagacagttttgtcatacctgttatatatgttgc-----
upper sequence: GLYMA13G28120.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G089484_T01 (Zea mays), 5'ss of exon 7
ATGTACGAGAGCTTATATACCGAGAGATTCTGGAGTATCATCCAAAGATGTTGAAGGAATTTCTAGAGGGATCAGAGCCAACAGGTTTCATGTATCCAAGgtattgtctaaatctctatccaaatttctgttttgcacctcattagcacttcatgaacaacata-tttgggggttggtttcacttgatattgttgcc-taac
| || | ||||||||||| | || ||||| |||||||||||||||||| ||| ||| ||||| |||||| | ||| ||| ||||||||||| ||||||| | | | | | | | || || ||| | | | || || || || | | ||| |||| | | | ||||
ACATAAGGGAGCTTATATATAGGGAAATTCTTGAGTATCATCCAAAGATGCTGAGGGAGTTTCTTGAGGGAACTGAGTCAAGTGGTTTCATGTACCCAAGgtgtgtgcatagccaatgccacttccattattcaacatctcttgactaaaaagtgcctaatttagttcttgagacaattttg--tgatgctatagtagtaac
upper sequence: GLYMA13G28120.2 (Glycine max), 5'ss of exon 7
lower sequence: AT5G19010.1 (Arabidopsis thaliana), 5'ss of exon 7
ATGTACGAGAGCTTATATACCGAGAGATTCTGGAGTATCATCCAAAGATGTTGAAGGAATTTCTAGAGGGATCAGAGCCAACAGGTTTCATGTATCCAAGgtattgtctaaatctctatccaaatttctgttttgcacctcattagcacttcatgaacaacatatttgggggttggtttcacttgatattgttgcctaac
| || |||||||| |||||| ||||| ||||||||| || ||||||||| |||| |||| | || |||||||||||||| || ||||| || ||||| | | | || || || | | | | ||| || | | |||| | || | || |||| | |
ACGTCCGAGAGCTCATATACAGAGAGTCTCTGGAGTACCACCCAAAGATGCTGAAAGAATACTTGGATGGATCAGAGCCAACTAACTTTATGTACCCGAGgtaccggcctgagct--gacctgcttcatactatactcctgtgtatta-tccatgttcttatggttaatgtatta--ttcattctgcag-----------
upper sequence: GLYMA13G28120.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv05s0020g02530.t01 (Vitis vinifera), 5'ss of exon 7
ATGTACGAGAGCTTATATACCGAGAGATTCTGGAGTATCATCCAAAGATGTTGAAGGAATTTCTAGAGGGATCAGAGCCAACAGGTTTCATGTATCCAAGgtattgtctaaatctctatccaaatttctgttttgcacctcattagcacttcatgaacaacatatttgggggttggtttcac-ttgatattgttgcctaac--
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ACGTACGAGATCTCATTTACCGAGAGATTCTTGAGTACCATCCAAAGATGTTGAAAGAGTACTTAGAGGGAACCGAACCAACAAGCTTCATGTATCCAAGgtattgt-tatttgaaacttttaattgttaatttttaaccca--acttctgggccaattactgtattgaacatctttttaatgttcatgacctcacctgatgcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192298791|gb|FG991027.1|FG991027EST: TTGAAGGAATTTCTAGAGGGATCAGAGCCAACAGGTTTCATGTATCCAAG TGCTGTGGACCACTTCAAGAAACAATTTGCATATCTTGAGGAGCATTACGG
genomic: TTGAAGGAATTTCTAGAGGGATCAGAGCCAACAGGTTTCATGTATCCAAGgtattgtcta ... ttttgaatagTGCTGTGGACCACTTCAAGAAACAATTTGCATATCTTGAGGAGCATTACGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGTACGAGAGCTTATATACCGAGAGATTCTGGAGTATCATCCAAAGATGTTGAAGGAATTTCTAGAGGGATCAGAGCCAACAGGTTTCATGTATCCAAGgtattgtctaaatctctatccaaatttctgttttgcacctcattagcacttcatgaacaacatatttgggggttggtttcacttgatattgttgcctaac
- - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggttg