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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGGAGGGACTCCTGCAGTTATCCGCTACCTTCTTGAGCAAGGCTTTTTAGATGGTGACTGTATGACTGgtatgtttacatgcctttgtgtgtagattgttaaaaacagaaggttaatttccgcaagatatacttatctctaacatacatatacctcttctccag

Basic information

species Glycine max
transcript GLYMA13G27810.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207741614|gb|GD717708.1|GD717708
EST:     TGGTGACTGTATGACTG                         TCACTGGAAAAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCCA
genomic: TGGTGACTGTATGACTGgtatgtttac ... tcttctccagTCACTGGAAAAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCCA
EST: gi|23734787|gb|BU765638.1|BU765638
EST:     TATCCGCTACCTTCTTGAGCAAGGCTTTTTAGATGGTGACTGTATGACTG                         TCACTGGAAAAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCCA
genomic: TATCCGCTACCTTCTTGAGCAAGGCTTTTTAGATGGTGACTGTATGACTGgtatgtttac ... tcttctccagTCACTGGAAAAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCCA
EST: gi|208154419|gb|GD952686.1|GD952686
EST:     GTGACTAGTATGACTG                         TCACTGGAAAAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCC
genomic: GTGACT-GTATGACTGgtatgtttac ... tcttctccagTCACTGGAAAAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCC
EST: gi|14196091|gb|BE658016.2|BE658016
EST:     TATCCGCTACCTTCTTGAGCAAGGCTTTTTAGATGGTGACTGTATGACTG                         TCACTGGAAAAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCCA
genomic: TATCCGCTACCTTCTTGAGCAAGGCTTTTTAGATGGTGACTGTATGACTGgtatgtttac ... tcttctccagTCACTGGAAAAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCCA
EST: gi|151400516|gb|EV270330.1|EV270330
EST:     TATCCGCTACCTTCTTGAGCAAGGCTTTTTAGATGGTGACTGTATGACTG                         TCACTGGAAAAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCCA
genomic: TATCCGCTACCTTCTTGAGCAAGGCTTTTTAGATGGTGACTGTATGACTGgtatgtttac ... tcttctccagTCACTGGAAAAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCCA
EST: gi|16281629|gb|BI944586.1|BI944586
EST:     TATCCGCTACCTTCTTGAGCAAGGCTTTTTAGATGGTGACTGTATGACTG                         TCACTGGAAAAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCCA
genomic: TATCCGCTACCTTCTTGAGCAAGGCTTTTTAGATGGTGACTGTATGACTGgtatgtttac ... tcttctccagTCACTGGAAAAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCCA
EST: gi|24136426|gb|BU926936.1|BU926936
EST:     TATCCGCTACCTTCTTGAGCAAGGCTTTTTAGATGGTGACTGTATGACTG                         TCACTGGAAAAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCCA
genomic: TATCCGCTACCTTCTTGAGCAAGGCTTTTTAGATGGTGACTGTATGACTGgtatgtttac ... tcttctccagTCACTGGAAAAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCCA
EST: gi|193654385|gb|FK596547.1|FK596547
EST:     TATCCGCTACCTTCTTGAGCAAGGCTTTTTAGATGGTGACTGTATGACTG                         TCACTGGAAAAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCCA
genomic: TATCCGCTACCTTCTTGAGCAAGGCTTTTTAGATGGTGACTGTATGACTGgtatgtttac ... tcttctccagTCACTGGAAAAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTGGAGGGACTCCTGCAGTTATCCGCTACCTTCTTGAGCAAGGCTTTTTAGATGGTGACTGTATGACTGgtatgtttacatgcctttgtgtgtagattgttaaaaacagaaggttaatttccgcaagatatacttatctctaacatacatatacctcttctccag

- - - - - - - - - - - - - - - - - -  AGCAAG