1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTGTAAAAATATGGTTTCTTGCCATTATCTACTTCATAGCAGGGGTCCCTGGAGCATATGTTCTGTGGTATCGCCCATTATATCGTGCTTTTAGgtaaaaaaaataattcttatgtgcatttatttgttttattttttttaatgtattatgcaacttcaatttgtgagcatttattttataacttgtatactaa...
species | Glycine max |
transcript | GLYMA13G25460.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTCCCTGGAGCATATGTTCTGTGGTATCGCCCATTATATCGTGCTTTTAG GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCATGTTTTATCTGEST: gi|209729488|gb|BW651841.1|BW651841
genomic: GTCCCTGGAGCATATGTTCTGTGGTATCGCCCATTATATCGTGCTTTTAGgtaaaaaaaa ... ttttttgcagGAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCATGTTTTATCTG
EST: GTTCCTGGAGCATATGTTCTGTGGTATCGCCCATTATATCGTGCTTTTAG GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCATGTTTTATCTGEST: gi|192299791|gb|FG990057.1|FG990057
genomic: GTCCCTGGAGCATATGTTCTGTGGTATCGCCCATTATATCGTGCTTTTAGgtaaaaaaaa ... ttttttgcagGAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCATGTTTTATCTG
EST: GTCCCTGGAGCATATGTTCTGTGGTATCGCCCATTATATCGTGCTTTTAG GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCATGTTTTATCTG
genomic: GTCCCTGGAGCATATGTTCTGTGGTATCGCCCATTATATCGTGCTTTTAGgtaaaaaaaa ... ttttttgcagGAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCATGTTTTATCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTAAAAATATGGTTTCTTGCCATTATCTACTTCATAGCAGGGGTCCCTGGAGCATATGTTCTGTGGTATCGCCCATTATATCGTGCTTTTAGgtaaaaaaaataattcttatgtgcatttatttgttttattttttttaatgtattatgcaacttcaatttgtgagcatttattttataacttgtatactaa
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaataa