Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGAAAGTATGAAAATGCCTCTATTGACTTTCAGATAGAGTTTTACAAGAATGAGGGATTGACACCATACACAGAGGCTAAGCTTCCTCTTATAAGTGgtaggtagaactgccttcctgtatttatctaggatgagttgcacctgtttcattgtttttttaaaaacttgtttcaaatgctgcag

Basic information

species Glycine max
transcript GLYMA13G24770.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G24770.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv00s0265g00120.t01 (Vitis vinifera), 5'ss of exon 7
GCTGGAAAGTATGAAAATGCCTCTATTGACTTTCAGATAGAGTTTTACAAGAATGAGGGATTGACACCATACACAGAGGCTAAGCTTCCTCTTATAAGTGgtaggtagaactgccttcctgtatttatctaggatgagttgcacctgtttcattgtttttttaaaaacttgtttcaaatgctgcag------
||||  |||||||| ||||| || || || |||||| | |||||||| || | |||||| || ||||||||  | ||||||||||||||  ||| |||||||||||  ||   | ||| | | ||| | |    |  |||  | ||||| |||  ||  || |      || ||  | |||||         
GCTGCGAAGTATGATAATGCATCGATAGATTTTCAGGTTGAGTTTTATAAAAGTGAGGGTTTAACACCATATTCTGAGGCTAAGCTTCCCATTACAAGTGgtaggtccaagatcattcttctctttgtttttattcggttttatctgttccatctttcattcagttttctggtttca-tgctgggtttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192296527|gb|FG991633.1|FG991633
EST:     GAATGAGGGATTGACACCATACACAGAGGCTAAGCTTCCTCTTATAAGTG                         ATGTTCCTGAAGGATGTGTGATAGTACGAGAGCATGTTCCTATTAGCAACC
genomic: GAATGAGGGATTGACACCATACACAGAGGCTAAGCTTCCTCTTATAAGTGgtaggtagaa ... aatgctgcagATGTTCCTGAAGGATGTGTGATAGTACGAGAGCATGTTCCTATTAGCAACC