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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTTTGACCGAGCTCTCATTCAACTGGGTCGGCTTCATAAGTGCTATGATTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcctatgctagatatacacttctaaatttgtttgaatttctgatttccatgaaattacttttatgtcttcaactcttcatactatactgactattgctctttcatattattattaaataactctttgtgcag

Basic information

species Glycine max
transcript GLYMA13G24360.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G24360.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G070605_T01 (Zea mays), 5'ss of exon 7
ATCTTTGACCGAGCTCTCATTCAACTGGGTCGGCTTCATAAGTGCTATGATTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcctatgctagatatacacttctaaatttgtttgaatttctgatt-tccatgaaattacttttatgtcttcaactcttcatactatactgactattgctctttcatattattattaaataactctttgtgcag
|||  | || ||||||||||||||||||   |||||||| | ||| ||||| |||||||| || ||||| ||| | ||||| ||||| ||||||||||||||   ||  | |    ||| | | ||  |    ||        |||| ||  |   ||  ||| |                                                                          
ATCCCTTACTGAGCTCTCATTCAACTGGACTGGCTTCATCAATGCCATGATATCAAACATCTCATTCACCTACAGGAGCATTTATTCCAAGAAAGCCATGgt---ctgttgtttacgatttgctctcttgt-cttaaccatccttctaatcgtttctggcattgcag------------------------------------------------------------------------

upper sequence: GLYMA13G24360.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G083344_T03 (Zea mays), 5'ss of exon 7
ATCTTTGACCGAGCTCTCATTCAACTGGGTCGGCTTCATAAGTGCTATGATTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgtt-atctcctatgctagatatacacttctaaatttgtttgaatttctgatttccatgaaattacttttatgtcttcaactcttcatactatactgactattgctctttcatattattattaaataactctttgtgcag
|||  | || || |||||||| || |||   |||||||| | ||| ||||| ||||| ||||| ||||| ||||||||||||||||| ||||| || |||||| ||||| |  ||     ||     | || ||    |||    |||   |||   | |  | || ||   |     ||| ||| || | |        || || | ||| |                          
ATCCCTCACTGAACTCTCATTTAATTGGACTGGCTTCATTAATGCCATGATCTCAAATATTTCTTTCACCTACCGAAGCATCTATTCTAAGAAGGCTATGgtttatctctttggcctagcat-----tttacatcaaattgctcctctacattcttagcagctcctatttgctgacttact-ttcttattgtt-------ttcctttgtcacag-------------------------

upper sequence: GLYMA13G24360.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv10s0003g00300.t01 (Vitis vinifera), 5'ss of exon 7
ATCTTTGACCGAGCTCTCATTCAACTGGGTCGGCTTCATAAGTGCTATGATTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcctatgctagatatacacttctaaatttgtttgaatttctgatttccatgaaattacttttatgtcttcaactcttcatacta--tactgactattgctctttcata------ttattattaaataactc--tttgtgcag
||| ||||| ||||| |||||||||||| | |||||||| |||||||||||||| || || |||||||| ||| | || |||||||||||||| ||||||||||||| ||||      | | | |||     ||| ||    |||||| | |  |  |||  ||   || ||    |   ||| | |  |  || |  |   ||  | |  | |       |  || | ||| | |   ||| |||||
ATCATTGACTGAGCTATCATTCAACTGGATTGGCTTCATTAGTGCTATGATTTCTAATATCTCCTTCACTTACAGGAGTATCTATTCAAAGAAGGCCATGgttatcttctat------tctgctcttgactgttttttcttttttctggtcttgaataaaacacacataggtggcaatagcttgagaagagctattttcctctgtacctcaaaaattctccttctaatgaatgaatgggtttttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5753077|gb|AI960364.1|AI960364
EST:     TTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|7588731|gb|AW704520.1|AW704520
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|26269191|gb|CA820254.1|CA820254
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|26056377|gb|CA799291.1|CA799291
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACCGTACCCATATCTATGCCTACATTTCCCTCCTTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|20498046|gb|BQ272976.1|BQ272976
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|22524479|gb|BU083290.1|BU083290
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTTCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|16995981|gb|BM085353.1|BM085353
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|10845918|gb|BF068938.1|BF068938
EST:     TATCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATCGACAGTACCAATCTCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|120530166|gb|EH258300.1|EH258300
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACA
EST: gi|22524864|gb|BU083675.1|BU083675
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|6134862|gb|AW133255.1|AW133255
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|22524883|gb|BU083694.1|BU083694
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|193628825|gb|FK577661.1|FK577661
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|22540054|gb|BU089897.1|BU089897
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|17964192|gb|BM270931.1|BM270931
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|13481992|gb|BG511335.1|BG511335
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCT
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCT
EST: gi|19053945|gb|BM732612.1|BM732612
EST:     CAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: CAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|193465757|gb|FK433362.1|FK433362
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCAT
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCAT
EST: gi|7690833|gb|AW758970.1|AW758970
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTTCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|207810509|gb|GD781618.1|GD781618
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTA
EST: gi|7926336|gb|AW832362.1|AW832362
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|20448949|gb|BQ253073.1|BQ253073
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|7690957|gb|AW759092.1|AW759092
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|15000011|gb|BI320825.1|BI320825
EST:     ATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: ATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|9900710|gb|BE609678.1|BE609678
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|23053059|gb|BU577550.1|BU577550
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|5753079|gb|AI960366.1|AI960366
EST:     TTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|23057431|gb|BU578105.1|BU578105
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|26048112|gb|CA784701.1|CA784701
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|151395328|gb|EV265199.1|EV265199
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
EST: gi|7285024|gb|AW597511.1|AW597511
EST:     TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATG                         ACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA
genomic: TTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcct ... ctttgtgcagACTGATATGGACAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCTTTGACCGAGCTCTCATTCAACTGGGTCGGCTTCATAAGTGCTATGATTTCAAACATTTCCTTCACGTACCGAAGCATCTATTCAAAGAAAGCCATGgttatctcctatgctagatatacacttctaaatttgtttgaatttctgatttccatgaaattacttttatgtcttcaactcttcatactatactgactattgctctttcatattattattaaataactctttgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA