Sequence
atgc intronic sequence ATGC exonic sequenceGTTCTTTTGGAACTGTACATCGTGCTGAGTGGAATGGCTCGgtaagccaatctctcttaaattgatgctgtataaatgttactcctaacatagtattattatcctaataggcccagctcaatgcacatctagtagtacaag...
Basic information
species | Glycine max |
transcript | GLYMA13G21480.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G21480.1 (Glycine max), 5'ss of exon 7
lower sequence: AT5G03730.2 (Arabidopsis thaliana), 5'ss of exon 7
GTTCTTTTGGAACTGTACATCGTGCTGAGTGGAATGGCTCGgtaagccaatctctctta-aattgatgctgtataaatgttactc-ctaacatagtattattatcctaataggcccagctcaatgcacatctagtagtacaag-
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GTTCCTTTGGCACTGTCCACCGTGCTGAGTGGCATGGCTCGgtaagaacttttttgtcagaatttacgcagctgaattttttttcgctctaaaaatttggttgtgacttttggatctgcttggtat---tataaaaggcaaagt
upper sequence: GLYMA13G21480.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0007g03910.t01 (Vitis vinifera), 5'ss of exon 7
GTTCTTTTGGAACTGTACATCGTGCTGAGTGGAATGGCTCGgtaagccaatctctcttaaattgatgctgtataaatgttactcctaacatagtattattatcctaataggcccagctcaatgcacatctagtagtacaag---
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GTTCTTTTGGGACTGTTCATCGTGCTGATTGGAATGGATCGgtaagc-aatatatcctgtgtttatgctattatcatattatgattccaaggccattgatatgagaatggttgcagccccttttg--ttaggtagttcttgataMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19271170|gb|BM887426.1|BM887426EST: GTTCTTTTGGAACTGTACATCGTGCTGAGTGGAATGGCTCG GATGTTGCTGTGAAAATTTTGATGGAACAGGATTTTCATGCTGAGCGCTTC
genomic: GTTCTTTTGGAACTGTACATCGTGCTGAGTGGAATGGCTCGgtaagccaat ... catattgcagGATGTTGCTGTGAAAATTTTGATGGAACAGGATTTTCATGCTGAGCGCTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTCTTTTGGAACTGTACATCGTGCTGAGTGGAATGGCTCGgtaagccaatctctcttaaattgatgctgtataaatgttactcctaacatagtattattatcctaataggcccagctcaatgcacatctagtagtacaag
- - - - - - - - - - - - - AGTGGA