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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtatattgttgatattggctctctttctctctcatacctgaatatttcagatgactgacattttgttattgtgtgtttgttttttcaatag

Basic information

species Glycine max
transcript GLYMA13G20780.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G20780.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os02g41590.1 (Oryza sativa), 5'ss of exon 7
GTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtatattgttgatat----tggctctctttctctctcatacctgaatatttcagatgactgacattttgttattgtgtgtttgttttttcaatag-----
 || || ||||| ||||||||||| ||||| ||||| || ||||||||| ||| || |||||| || |||||| ||||||  || |||| ||    ||    | || |   | ||||  | |  | || |  ||   ||  | |    ||      |   ||  ||    |      
ATCACTGGTTGCAAACTTATCAGCAGCAAACTGCTACAAATCTGAGCATCTGAAGAAACCGGAGAACTGGGCACTAGgtaatttattgagatattctgagctttttgccaccacatatttcatcacttaatttgggggatttctgtgcatatcagctgcattaattgtgcaaactct

upper sequence: GLYMA13G20780.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv13s0019g04480.t01 (Vitis vinifera), 5'ss of exon 7
GTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtatattgttgatattggctctctttctctctcatacctgaatatttcagatgactgacattttgttattgtgtgtttgttttttcaatag
||| ||  ||||||||||||| |||||||||||||| ||||| || || |||| ||| || ||||| ||||||||||||||  | ||  |  | | |   | | |  ||  |   |   ||| | | |||    || || | || |  |     |  | |||  | ||
GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCCGAACACTTGAAGAGGCCTGAAAACTGGGCATTAGgtattattttctttcttgatgcttctattccttgtttgttgctatataacatgttgaactttcttttttatttaaactcctattttgacag

upper sequence: GLYMA13G20780.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv13s0019g04470.t01 (Vitis vinifera), 5'ss of exon 7
GTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtatattgttgatattggctctctttctctctcatacctgaatatttcagatgactgacattttgttattgtgtgtttgttttttcaatag
||| ||  ||||||||||||| |||||||||||||| |||||||| ||||||| ||| || ||||| |||||| |||||||  | ||  |  | | |   | | |  ||  |   |   ||| | | |||    || || | || |  |     |  | |||  | ||
GTCACTCATTGCCAACTTATCGGCTGCAAATTGCTACAAGTCTGAACATTTGAAGAGGCCTGAAAACTGGGCACTAGgtattattttctttcttgatgcttctattccttgtttgttgctatataatatgctgaactttcttttttatttaaactcctattttgacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209708530|gb|BW668141.1|BW668141
EST:     AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAG                         TTGAAAAGGCCAAGTATTTCTACATTTCTGGCNTTTTNCTCACTGTATCTC
genomic: AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtatattgtt ... ttttcaatagTTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC
EST: gi|10845490|gb|BF071116.1|BF071116
EST:     AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAG                         TTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC
genomic: AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtatattgtt ... ttttcaatagTTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC
EST: gi|17518725|gb|BM187767.1|BM187767
EST:     CCGGAAAATTGGGCATTAG                         TTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC
genomic: CCGGAAAATTGGGCATTAGgtatattgtt ... ttttcaatagTTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC
EST: gi|192324906|gb|FK016092.1|FK016092
EST:     AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAG                         TTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC
genomic: AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtatattgtt ... ttttcaatagTTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC
EST: gi|213598835|gb|DB968306.1|DB968306
EST:     AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAG                         TTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC
genomic: AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtatattgtt ... ttttcaatagTTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC
EST: gi|209711575|gb|BW676820.1|BW676820
EST:     AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAG                         TTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC
genomic: AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtatattgtt ... ttttcaatagTTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC
EST: gi|5688475|gb|AI941490.1|AI941490
EST:     GAAAATTGGGCATCCC                         CTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC
genomic: GAAAATTGGGCATTAGgtatattgtt ... ttttcaatagTTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC
EST: gi|193667347|gb|FK609753.1|FK609753
EST:     GAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAG                         TTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC
genomic: AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtatattgtt ... ttttcaatagTTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC
EST: gi|9440259|gb|BE440768.1|BE440768
EST:     AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAG                         TTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC
genomic: AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtatattgtt ... ttttcaatagTTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC
EST: gi|151405346|gb|EV275160.1|EV275160
EST:     AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAG                         TTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACCGTATCTC
genomic: AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtatattgtt ... ttttcaatagTTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC
EST: gi|207703119|gb|GD684897.1|GD684897
EST:     AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAG                         TTGAAAGGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC
genomic: AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtatattgtt ... ttttcaatagTTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC
EST: gi|151404672|gb|EV274486.1|EV274486
EST:     AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAG                         TTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC
genomic: AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtatattgtt ... ttttcaatagTTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC
EST: gi|11687342|gb|BF594982.1|BF594982
EST:     AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATNGGGCATTAG                         TTGAAAAG-CCAACTATTTCTACATTTCTGGCTTTCTCCTTACTGTATCTG
genomic: AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtatattgtt ... ttttcaatagTTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC
EST: gi|213611486|gb|DB959196.1|DB959196
EST:     AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAG                         TTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC
genomic: AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtatattgtt ... ttttcaatagTTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC
EST: gi|9987590|gb|BE661698.1|BE661698
EST:     AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAG                         TTGAAAAGGCCAAGNATTTCTACATTTCTGGCTTTTTCCTCACTG
genomic: AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtatattgtt ... ttttcaatagTTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTG
EST: gi|213597865|gb|DB958246.1|DB958246
EST:     AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAG                         TTGAAAAGGCCAAGTATTTCTACATTTCTG
genomic: AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtatattgtt ... ttttcaatagTTGAAAAGGCCAAGTATTTCTACATTTCTG
EST: gi|151405163|gb|EV274977.1|EV274977
EST:     AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAG                         TTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC
genomic: AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtatattgtt ... ttttcaatagTTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC
EST: gi|19937792|gb|BQ081423.1|BQ081423
EST:     AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGNGCATTAG                         TTGAAAAGGCCAAGTATTTCTACATTTCTGGCTATTTC
genomic: AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtatattgtt ... ttttcaatagTTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTC
EST: gi|12773014|gb|BG237941.1|BG237941
EST:     AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAG                         TTGAAAAGGCCAGGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTG
genomic: AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtatattgtt ... ttttcaatagTTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC
EST: gi|21602656|gb|BQ612987.1|BQ612987
EST:     ATTTGACGAGACCGGAAAATTGGGCATTAG                         TTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC
genomic: ATTTGACGAGACCGGAAAATTGGGCATTAGgtatattgtt ... ttttcaatagTTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC
EST: gi|14126129|gb|BG790567.1|BG790567
EST:     AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAG                         TTGAAAAGGCCAAG
genomic: AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtatattgtt ... ttttcaatagTTGAAAAGGCCAAG
EST: gi|15287897|gb|BI471788.1|BI471788
EST:     GAGACCGGAAAATTGGGCATTAG                         TTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC
genomic: GAGACCGGAAAATTGGGCATTAGgtatattgtt ... ttttcaatagTTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC
EST: gi|308098710|gb|HO760451.1|HO760451
EST:     AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAG                         TTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC
genomic: AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtatattgtt ... ttttcaatagTTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC
EST: gi|15199748|gb|BI423990.1|BI423990
EST:     AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAG                         TTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC
genomic: AAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGgtatattgtt ... ttttcaatagTTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTC