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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGACAAGGCATCCTCTGACCTTAAGAATACAAATGTTAGACTTAAAGACACTGTGAACCAGgttagctgactacaattctgtctgtatacatttccatcaatttaaagttttatctgatagatttcttgctgaatcttatatgatttttttcatccag

Basic information

species Glycine max
transcript GLYMA13G20220.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G20220.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G09740.1 (Arabidopsis thaliana), 5'ss of exon 7
GTGGACAAGGCATCCTCTGACCTTAAGAATACAAATGTTAGACTTAAAGACACTGTGAACCAGgttagctgactaca-attctgtctgtatacatttccatcaatttaaagttttatctgatagatttcttgctgaatcttatatgatttttttcatccag
|||||||  ||| |||| || |||||||| || ||||||||||||||||| || ||||||||||| |  | | |    | ||| | | | |  | |  || | |  ||    | |   |||||    |  |    ||      ||  | ||||   | |||
GTGGACAGAGCAACCTCCGATCTTAAGAACACCAATGTTAGACTTAAAGATACCGTGAACCAGgtaatttaagtttggaatctatttct-tggactctcagccacataggtctgttcttgata--cctaatataaaa----gcattgtcttttgtttacag

upper sequence: GLYMA13G20220.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0040g02130.t01 (Vitis vinifera), 5'ss of exon 7
GTGGACAAGGCATCCTCTGACCTTAAGAATACAAATGTTAGACTTAAAGACACTGTGAACCAGgttagctgactacaattctgtctgtatacatttccatcaatttaaagttttatctgatagatttct-tgctgaatcttatatgatttttt-----tcatccag
|||||||| ||| |  ||||||| |||||||| |||||||||||||| |||||||| |||||||| |  ||||||   ||  |  |  ||     |  |||   |       | ||||| |||||| || | ||  |||| | |     ||||     |  | |||
GTGGACAAAGCAACAGCTGACCTCAAGAATACTAATGTTAGACTTAAGGACACTGTTAACCAGgtaatttgactatt-ttaagcttagatttccatttatcctctcctgtgctcatctg-tagattactctactagatctaacaaagggttttggtattgcttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|308222721|gb|HO760631.1|HO760631
EST:     CCTCTGACCTTAAGAATACAAATGTTAGACTTAAAGACACTGTGAACCAG                         CTTCGATCCAGTCGAAACTTCTGTATTGATATTGTTTTGTTGATTATAATT
genomic: CCTCTGACCTTAAGAATACAAATGTTAGACTTAAAGACACTGTGAACCAGgttagctgac ... tttcatccagCTTCGATCCAGTCGAAACTTCTGTATTGATATTGTTTTGTTGATTATAATT