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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTGTATCCTTTCCAAGAATTTCAAAATGTGTTTGTTCAGCACTTCCTATATgttagcatctacataacagcgaaatacacaagtatcatttggtgcgccatgtaaaatcaaactatttttgtgtttttcttaataaag

Basic information

species Glycine max
transcript GLYMA13G19500.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G19500.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0040g02470.t01 (Vitis vinifera), 5'ss of exon 7
-------------------------------------------------AGGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTGTATCCTTTCCAAGAATTTCAAA-------ATGTGTTTGTTCAGCAC--TTCCTATATgttagcatctacataacagcgaaatacacaagtatcattt--ggtgcgccatgtaaaatcaaactatttttgtgtttttcttaataaag-------
                                                 | ||||| ||||| |||||||| ||||| || || ||||||||||||||||||||||||   || | | | ||        |     | ||| |  ||  ||| |  |   ||   ||   | || |      ||      ||| || |    |     |  |   ||| || |  |  | | |||| |||||||||        
ATTGCAGTTTGTGCTGATGATCCTGAGTACCGACACTACACTGATATCAATGAGCTCCCTCCGCACCGTTTGGCTGAGATCCGCCGTTTCTTTGAAGATTgtatccttctaaaaattcttaatccttagcaaacactagtttaaaacgattcttcaagcatactgtccttaaaatacttgtttatttttttataatctcaaatctagaaaattggatctaaatcatcct-ttttttccttaataaaccaatcag