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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGCTGTCTGTGCTGATGATCCTGAGTATAGGCATTACAATGATATCAAGGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttccaagaatttcaaaatgtgtttgttcagcacttcctatatgttagcatctacataacagcgaaatacacaagtatcatttggtgcgccatgtaaaatcaaactatttttgtgtttttcttaataaaggaattag

Basic information

species Glycine max
transcript GLYMA13G19500.1
intron # 7
splice site 5'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G19500.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g74350.1 (Oryza sativa), 5'ss of exon 8
ATTGCTGTCTGTGCTGATGATCCTGAGTATAGGCATTACAATGATATCAAGGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttccaagaatttcaaaatgtgtttgttcagcacttcctatatgttagcatctacataacagcgaaatacacaagtatcatttggtgcgccatgtaaaatcaaactatttttgtgtttttcttaataaaggaattag
||||| ||||||||||||||||||||||| | ||||||||| ||||||||||| || || || ||||| |||||||||||  | |||||||| || || ||||||||||     |||||   | ||   ||  |  | ||||  | ||| |  ||||  | | | ||   |||||  || | | | | |  ||   || |   |   |   |                               
ATTGCAGTCTGTGCTGATGATCCTGAGTACAAGCATTACAACGATATCAAGGACCTCCCACCTCACCGCTTAGCTGAAATCAGGCGTTTCTTCGAGGACTgtatcctttt----aattt---attgctcttaat--gtacttgttctattt--gcattcatagagca-taaaatattcatggaac-tctactgaaacaagctcagctagcttc------------------------------

upper sequence: GLYMA13G19500.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os05g02310.1 (Oryza sativa), 5'ss of exon 7
ATTGCTGTCTGTGCTGATGATCCTGAGTATAGGCATTACAATGATATCAAGGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttccaag------aatttcaaaatgtgtttgttcagcacttcctatatgttagcatcta-cataacagcgaaatacacaagtatcatttggtgcgccatgtaaaatcaaactatttttgtgtttttcttaataaaggaattag
||||| || |||||||||||||||||||| | |||||||||||||||||||||||| || || ||||| || ||||||||  | || || ||||| || ||||||||||   |       ||| ||||  | ||  |  | |     | |||     || |   |  | ||||   ||| | ||| | |||   ||| | |                                                 
ATTGCCGTTTGTGCTGATGATCCTGAGTACAAGCATTACAATGATATCAAGGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTTTTTGAGGACTgtatccttttttatcaacttaatatcaagttctgcattctaaatgaattctaggcaataactcatgtcctaaccttgaactccaccaatatg--ttgttccc------------------------------------------------

upper sequence: GLYMA13G19500.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G137930_T02 (Zea mays), 5'ss of exon 7
ATTGCTGTCTGTGCTGATGATCCTGAGTATAGGCATTACAATGATATCAAGGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttccaagaatttcaaaatgtgtttgttcagcacttcctatatgttagcatctacataacagcgaaatacacaagtatcatttggtgcgccatgtaaaatcaaactatttttgtgtttttcttaataaaggaattag
||||| || || ||||||||||| ||||| |||||||||||||||||||||||||| || || ||||| || ||||||||  | || ||||| || || ||||||||||  | ||  ||||  |    || || | ||    || | |   ||| | |||||||| || ||          |    ||| |     ||||   ||| ||  | ||||                          
ATTGCAGTGTGCGCTGATGATCCCGAGTACAGGCATTACAATGATATCAAGGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTCTTCGAGGACTgtatcctttttatga--ttcatcagtatttcgtcctgc-taaccaagagtctagta-ctacataa-agtgat---------tgctgttttg---atcatgcttaat-aagttctttta-------------------------

upper sequence: GLYMA13G19500.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G53620.1 (Arabidopsis thaliana), 5'ss of exon 7
ATTGCTGTCTGTGCTGATGATCCTGAGTATAGGCATTACAATGATATCAAGGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttccaagaatttcaaaatgtgtttgttcagcacttcctatatgttagcatctacataacagcgaaatacacaagtatcatttggtgcgccatgtaaaatcaaactatttttgtgtttttcttaataaaggaattag
||||||||||| ||||| ||||| |||||| | |||||||| || ||||  |||||||| || || ||| | ||||| || || |||||||||||||| |||     |||      |   ||  | || ||| | |    |      | | |   |      |||    |    |                                                                    
ATTGCTGTCTGCGCTGACGATCCAGAGTATCGCCATTACAACGACATCAGTGAGCTTCCGCCTCATCGTATGGCTGAGATCCGCCGTTTCTTTGAAGACTgtgagtgttcttttcttacaaacttttggttggttaaggatgatatgaggctcatactcttgtaatcttgttgcag-------------------------------------------------------------------

upper sequence: GLYMA13G19500.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0040g02470.t01 (Vitis vinifera), 5'ss of exon 7
ATTGCTGTCTGTGCTGATGATCCTGAGTATAGGCATTACAATGATATCAAGGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttccaagaatttcaaa-------atgtgtttgttcagcac--ttcctatatgttagcatctacataacagcgaaatacacaagtatcattt--ggtgcgccatgtaaaatcaaactatttttgtgtttttcttaataaaggaattag
||||| || ||||||||||||||||||||  | || |||| ||||||||| ||||| ||||| |||||||| ||||| || || ||||||||||||||||||||||||   || | | | ||        |     | ||| |  ||  ||| |  |   ||   ||   | || |      ||      ||| || |    |     |  |   ||| || |  |  | | |||| |||||||||  ||| ||
ATTGCAGTTTGTGCTGATGATCCTGAGTACCGACACTACACTGATATCAATGAGCTCCCTCCGCACCGTTTGGCTGAGATCCGCCGTTTCTTTGAAGATTgtatccttctaaaaattcttaatccttagcaaacactagtttaaaacgattcttcaagcatactgtccttaaaatacttgtttatttttttataatctcaaatctagaaaattggatctaaatcatcct-ttttttccttaataaaccaatcag

upper sequence: GLYMA13G19500.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S46_53V6.1 (Physcomitrella patens), 5'ss of exon 8
ATTGCTGTCTGTGCTGATGATCCTGAGTATAGGCATTACAATGATATCAAGGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttccaagaatttcaaaatgtgtttgttcagcacttcctatatgttagcatctacataacagcgaaatacacaagtatcatttggtgcgccatgtaaaatcaaactatttttgtgtttttcttaataaaggaattag
|| |||||||||||||| ||||| |||||||| || | ||| || ||||| ||| |||||||||| ||  | || ||||||||||| || || ||||||||||     |  |  |||||||||   |  ||  | ||  |||| |  ||  |||    ||||| | | |    |  |    |  ||||||  |   ||  | |  |  ||  |||  | ||      | |             
ATCGCTGTCTGTGCTGACGATCCGGAGTATAGACACTTCAAAGACATCAATGAGTTTCCTCCACATCGACTTGCCGAAATTCGTCGGTTTTTCGAAGATTgtaagtcctgaataaatttcaaa---tacttcgtaag--cttcattgataatagaggttacatgaaatct---tgtatttcttgcatttgtggtttcaaatgacttacaatcattactttgagccgttcag------------

upper sequence: GLYMA13G19500.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S142_132V6.1 (Physcomitrella patens), 5'ss of exon 4
ATTGCTGTCTGTGCTGATGATCCTGAGTATAGGCATTACAATGATATCAAGGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgta--tcctttccaagaattt---------------caaaatgtgtttgttcagcacttcctatatgttagcatctacataacagcgaaatacacaagtatcatttggtgcgccatgtaaaatcaaactatttttgtgtttttcttaataaaggaattag--------------------------------
|| |||||||||||||| ||||| ||||| ||||| | ||| || |||||||| || ||||| |||||||| ||||| || ||||| || ||||| || ||||  || ||| || |  ||                 ||  | | ||| ||| | | ||  | | ||||    |     |     |    |    | |   | | |  | |  |||| |   | |     || || |   | | ||||||  |  |||                                  
ATCGCTGTCTGTGCTGACGATCCCGAGTACAGGCACTTCAAGGACATCAAGGAACTCCCTCCCCACCGTTTGGCTGAGATCCGTCGGTTTTTTGAGGACTgtaagtcattttcatgcgttcatacctctggcgcactaatttattttttttcggtagttttttt-tgttttttttgttttttttcctccctgtgtatgctgc-tgtcatacatcatggattttaatgggtttgttttaggtctattaatatggacattcacttcactgactagcacgcaaccattgttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58021657|gb|CX708398.1|CX708398
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|151412335|gb|EV282147.1|EV282147
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|38193105|gb|CF922311.1|CF922311
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACANG-AAGCTGCAGTGAACGACTTTCTTCCTGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|208303442|gb|GE101246.1|GE101246
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|214009280|gb|DB988589.1|DB988589
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|208226813|gb|GE027764.1|GE027764
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAG
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAG
EST: gi|11413818|gb|BF425829.1|BF425829
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAACGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|192308688|gb|FK000078.1|FK000078
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCC
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAA-GGAAGTTGCAGTGAACGACTTTCTTCCTGCC
EST: gi|192330022|gb|FK020838.1|FK020838
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|21888361|gb|BQ741574.1|BQ741574
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|31472047|gb|CD414075.1|CD414075
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|41146349|gb|CK606560.1|CK606560
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|120494697|gb|EH222864.1|EH222864
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|11413799|gb|BF425810.1|BF425810
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|14259127|gb|BG882035.1|BG882035
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|193677791|gb|FK616613.1|FK616613
EST:     AGCTTCCTCCACACCGTTTAGCTGAAATTCG-CGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
genomic: AGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|192308689|gb|FK000079.1|FK000079
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|151410176|gb|EV279991.1|EV279991
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTCCTTCCTGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|192309831|gb|FK002943.1|FK002943
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCC
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAA-GGAAGTTGCAGTGAACGACTTTCTTCCTGCC
EST: gi|151411553|gb|EV281364.1|EV281364
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|193607632|gb|FK560115.1|FK560115
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|209719746|gb|BW672121.1|BW672121
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|192300349|gb|FG987866.1|FG987866
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAAGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|8283635|gb|BE021194.1|BE021194
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|120494567|gb|EH222734.1|EH222734
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|208192915|gb|GD989266.1|GD989266
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAG
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAG
EST: gi|193687397|gb|FK629168.1|FK629168
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|21995044|gb|BQ786572.1|BQ786572
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|193483778|gb|FK451887.1|FK451887
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|31312299|gb|CD397502.1|CD397502
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|151396440|gb|EV266317.1|EV266317
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|8283558|gb|BE021117.1|BE021117
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|9204997|gb|BE331221.1|BE331221
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|192330021|gb|FK020837.1|FK020837
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAG
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAG
EST: gi|58019190|gb|CX705932.1|CX705932
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|58023065|gb|CX709806.1|CX709806
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|193694539|gb|FK628591.1|FK628591
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCCGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|193687651|gb|FK628246.1|FK628246
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCCGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|192309832|gb|FK002944.1|FK002944
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|209701983|gb|BW664583.1|BW664583
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|6133848|gb|AW132241.1|AW132241
EST:     CAGCTTTCTTTCACACCGTT-AGCTGNAATTCGTCGGTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAA
genomic: GAGCTTCCTC-CACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAA
EST: gi|8401707|gb|BE057341.1|BE057341
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
EST: gi|151394138|gb|EV264009.1|EV264009
EST:     GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATT                         ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT
genomic: GGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttc ... aaggaattagACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTGCTGTCTGTGCTGATGATCCTGAGTATAGGCATTACAATGATATCAAGGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTgtatcctttccaagaatttcaaaatgtgtttgttcagcacttcctatatgttagcatctacataacagcgaaatacacaagtatcatttggtgcgccatgtaaaatcaaactatttttgtgtttttcttaataaaggaattag

- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA