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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTCACTGGGAGCTATTATGTACGAAATGTTGGTGGGATATCCACCTTTTTATTCTGATGATCCAATGTTAACATGTAGGAAGgtaatctttttgaaagaaatgttttttgtgattaatgcttatttgacattcacttgtgtaaagagagcacttttagaaagtgcagaatggatcatcaatt...

Basic information

species Glycine max
transcript GLYMA13G18670.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G18670.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0005g03690.t01 (Vitis vinifera), 5'ss of exon 7
GTGGTCACTGGGAGCTATTATGTACGAAATGTTGGTGGGATATCCACCTTTTTATTCTGATGATCCAATGTTAACATGTAGGAAGgtaatctttttgaaagaaatgttttttgtgattaatgcttatttgacattcacttgtgtaaagagagcacttttagaaagtgcagaatggatcatcaatt--
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GTGGTCACTTGGTGCTATCATGTATGAAATGCTTGTGGGGTATCCACCTTTTTATTCTGATGATCCCATGTCAACATGTAGGAAGgtaaacttgg-gaatacaactcattcagattttagtaatttctctgtatt-ataagttccaagttcttgggttgtgaattatcattttaccctactctgtaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335217|gb|CO979083.1|CO979083
EST:     TGGGATATCCACCTTTTTATTCTGATGATCCAATGTTAACATGTAGGAAG                         ATAGTAAATTGGAAAACTTACTTGAAATTTCCTGAAGAAGCTAGGCTATCC
genomic: TGGGATATCCACCTTTTTATTCTGATGATCCAATGTTAACATGTAGGAAGgtaatctttt ... ttttgtgcagATAGTAAATTGGAAAACTTACTTGAAATTTCCTGAAGAAGCTAGGCTATCC
EST: gi|192315781|gb|FK008491.1|FK008491
EST:     TGGGATATCCACCTTTTTATTCTGATGATCCAATGTTAACATGTAGGA-G                         ATAGTAAATTGGAAA-CTTACTTGAAATTTCCTGA-GA-GCTAGG
genomic: TGGGATATCCACCTTTTTATTCTGATGATCCAATGTTAACATGTAGGAAGgtaatctttt ... ttttgtgcagATAGTAAATTGGAAAACTTACTTGAAATTTCCTGAAGAAGCTAGG