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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGgcatgaaatcgtcacttcatttctacatttattctcttgcagattttggtgttttttgtgttttccattctaatttatcaggatgttttggttctgtgattcaatttatcag

Basic information

species Glycine max
transcript GLYMA13G17200.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G17200.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os11g40510.1 (Oryza sativa), 5'ss of exon 7
TGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGgcatgaaatcgtcacttcatttctacatttattctcttgcagattttggtgttttttgtgttttccattctaatttatcaggatgttttggttctgtgattcaatttatcag
 ||||| |||||||||||||||||||| || || || ||||| || ||||| |||||||||||  | |||||||||| |     || |     || ||  |  ||||||   ||| |  ||||      ||| |||    |  | || ||| ||||     || |  |||  |||             
AGATGCTAGGGTAATGTGGGATCAGAAAACTGGACGATCCAGAGGTTTTGGTTTTGTTTCTTTCAGAAATCAGCAGgta--gtgtcattgtgacagtttaatttttatttatttgtacttttt------tttggtg----cggtgctgattgatcat--ctttgttattcattgacag----------

upper sequence: GLYMA13G17200.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM5G835213_T01 (Zea mays), 5'ss of exon 8
TGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGgca-tgaaatcgtcacttcatttctacatttatt-ctcttgcagattttggtgttttttgtgttttccattctaatttatcaggatgttttggttctgtgattcaatttatcag
 ||||| ||||| |||||||| ||||| ||||| || ||||| || ||||| |||||||||||  |||| ||||||| | ||    | | | || |   ||   |  |||  |       | ||| |    |  |||    | |||     | | |||  ||   ||                       
AGATGCTAGGGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGGTTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcgccattatttaaaccctttgtgcattgttgccatgaacttttggagctgctgt----ttcatctcgttatgtcattattccttaacag------------------

upper sequence: GLYMA13G17200.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G008611_T02 (Zea mays), 5'ss of exon 8
TGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGgca-tgaaatcgtcacttcatttctacatttatt-ctcttgcagattttggtgttttttgtgttttccattctaatttatcaggatgttttggttctgtgattcaatttatcag
 ||||| || || |||||||| ||||| ||||| || ||||| |||||||| |||||||||||  |||| ||||||| | ||  | | |   || |   ||   |  |||  |       | ||| |    |  |||    | |||     | | |||  ||   ||       ||  |||         
AGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcaccattttttaaaccctttgtgcattgttgccatgaacttttggagctgctgt----ttcatctcgttatgtcattattccttaacaggatg-ctca---------

upper sequence: GLYMA13G17200.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G008611_T01 (Zea mays), 5'ss of exon 8
TGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGgca-tgaaatcgtcacttcatttctacatttatt-ctcttgcagattttggtgttttttgtgttttccattctaatttatcaggatgttttggttctgtgattcaatttatcag
 ||||| || || |||||||| ||||| ||||| || ||||| |||||||| |||||||||||  |||| ||||||| | ||  | | |   || |   ||   |  |||  |       | ||| |    |  |||    | |||     | | |||  ||   ||                       
AGATGCTAGTGTTATGTGGGACCAGAAAACAGGACGATCCAGAGGATTTGGTTTTGTTTCTTTCAGGAACCAGCAGgtagtgtcaccattttttaaaccctttgtgcattgttgccatgaacttttggagctgctgt----ttcatctcgttatgtcattattccttaacag------------------

upper sequence: GLYMA13G17200.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv11s0016g00700.t01 (Vitis vinifera), 5'ss of exon 7
TGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGgca-tgaaatcgtcacttcatttctacatttattctcttgcagattttggtgttttttgtgttttccattctaatt-tatcaggatgttttggttctgtgattcaatttatcag
 ||||| ||||| |||||||||||||| || || ||||| ||||| ||||| ||||||||||| ||||| ||||||| | |||||| |   ||| | |  |   ||| || | || |   ||||    |||||  |  ||    || | ||| | |||   | | ||| |||                  
AGATGCTAGGGTTATGTGGGATCAGAAAACTGGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTCCGGAACCAGCAGgtaatgaaatgg---ctttact--tgattttgttttgttcc---tttt--catttttcctcattcatgttatgattctgtcattttatcttgtttccag---------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193400330|gb|FK367929.1|FK367929
EST:     AGGGGATTTGGATTTGTTTTCTTTTTCGGAATCAGCAG                         GATGCCCAAAGTGCTATAAATGATTTGACTG
genomic: AGGGGATTTGGATTTG-TTTC-TTTTCGGAATCAGCAGgcatgaaatc ... aatttatcagGATGCCCAAAGTGCTATAAATGATTTGACTG
EST: gi|193440423|gb|FK407172.1|FK407172
EST:     GGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAG                         GATGCCCAAAGTGCTATAAATGATTTGACTG
genomic: GGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGgcatgaaatc ... aatttatcagGATGCCCAAAGTGCTATAAATGATTTGACTG
EST: gi|208226527|gb|GE028192.1|GE028192
EST:     GGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAG                         GATGCCCAAAGTGCTATAAATGATTTGACTG
genomic: GGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGgcatgaaatc ... aatttatcagGATGCCCAAAGTGCTATAAATGATTTGACTG
EST: gi|193402169|gb|FK370216.1|FK370216
EST:     GGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAG                         GATGCCCAAAGTGCTATAAATGATTTGACTG
genomic: GGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGgcatgaaatc ... aatttatcagGATGCCCAAAGTGCTATAAATGATTTGACTG
EST: gi|208294750|gb|GE093869.1|GE093869
EST:     TTTTCGGAATCAGCAG                         GATGCCCAAAGTGCTATAAATGATTTGACTG
genomic: TTTTCGGAATCAGCAGgcatgaaatc ... aatttatcagGATGCCCAAAGTGCTATAAATGATTTGACTG
EST: gi|208140082|gb|GD936902.1|GD936902
EST:     TTCGGAATCAGCAG                         GATGCCCAAAGTGCTATAAATGATTTGACTG
genomic: TTCGGAATCAGCAGgcatgaaatc ... aatttatcagGATGCCCAAAGTGCTATAAATGATTTGACTG
EST: gi|208196836|gb|GD995831.1|GD995831
EST:     GGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAG                         GATGCCCAAAGTGCTATAAATGATTTGACTG
genomic: GGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGgcatgaaatc ... aatttatcagGATGCCCAAAGTGCTATAAATGATTTGACTG
EST: gi|207826074|gb|GD799815.1|GD799815
EST:     GGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAG                         GATGCCCAAAGTGCTATAAATGATTTGACTG
genomic: GGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGgcatgaaatc ... aatttatcagGATGCCCAAAGTGCTATAAATGATTTGACTG
EST: gi|7029172|gb|AW458955.1|AW458955
EST:     AGACAGGCCGTGCCAGGGGATTTGGATTTGTTTGTTTTCGGAATCAGCAG                         GATGCCCAAAGGGCTATA
genomic: AGACAGGCCGTTCCAGGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGgcatgaaatc ... aatttatcagGATGCCCAAAGTGCTATA
EST: gi|193625489|gb|FK577477.1|FK577477
EST:     AGACAGGCCGTTCCAGGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAG                         GATGCCCAAAGTGCTATAAATGATTTGACTG
genomic: AGACAGGCCGTTCCAGGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGgcatgaaatc ... aatttatcagGATGCCCAAAGTGCTATAAATGATTTGACTG
EST: gi|193377660|gb|FK341436.1|FK341436
EST:     GGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAG                         GATGCCCAAAGTGCTATAAATGATTTGACTG
genomic: GGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGgcatgaaatc ... aatttatcagGATGCCCAAAGTGCTATAAATGATTTGACTG
EST: gi|42723064|gb|CK768963.1|CK768963
EST:     AGACAGGCCGTTCCAGGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAG                         GATGCCCAAAGTGCTATAAATGATTTGACTG
genomic: AGACAGGCCGTTCCAGGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGgcatgaaatc ... aatttatcagGATGCCCAAAGTGCTATAAATGATTTGACTG