1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTTTTTTTTTCTGCTAATGCTGCTGCCTTGGATTCAAGGAAGTCCTCCCCAAGGGTGACAAATGAAGCTGTCCAAAAGGCCgtaagtgctcatcaggattttcaatttgttcttttacttgataaattttattttagaagaattcttaaacctgtttgttttattttcttag
species | Glycine max |
transcript | GLYMA13G15140.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATTCAAGGAAGTCCTCCCCAAGGGTGACAAATGAAGCTGTCCAAAAGGCC GCTGCTGCTCTGAAGGGCTCTGATCATCGGAGGGCCACAAATGTTAGTGCCEST: gi|23052986|gb|BU577477.1|BU577477
genomic: ATTCAAGGAAGTCCTCCCCAAGGGTGACAAATGAAGCTGTCCAAAAGGCCgtaagtgctc ... attttcttagGCTGCTGCTCTGAAGGGCTCTGATCATCGGAGGGCCACAAATGTTAGTGCC
EST: ATTCAAGGAAGTCCTCCCCAAGGGTGACAAATGAAGCTGTCCAAAAGGCC GCTGCTGCTCTGAAGGGCTCTGATCATCGGAGGGCCACAAATGTTAGTGCCEST: gi|207754554|gb|GD728267.1|GD728267
genomic: ATTCAAGGAAGTCCTCCCCAAGGGTGACAAATGAAGCTGTCCAAAAGGCCgtaagtgctc ... attttcttagGCTGCTGCTCTGAAGGGCTCTGATCATCGGAGGGCCACAAATGTTAGTGCC
EST: ATTCAAGGAAGTCCTCCCCAAGGGTGACAAATGAAGCTGTCCAAAAGGCC GCTGCTGCTCTGAAGGGCTCTGATCATCGGAGGGCCACAAATGTTAGTGCCEST: gi|151393115|gb|EV262990.1|EV262990
genomic: ATTCAAGGAAGTCCTCCCCAAGGGTGACAAATGAAGCTGTCCAAAAGGCCgtaagtgctc ... attttcttagGCTGCTGCTCTGAAGGGCTCTGATCATCGGAGGGCCACAAATGTTAGTGCC
EST: ATTCAAGGAAGTCCTCCCCAAGGGTGACAAATGAAGCTGTCCAAAAGGCC GCTGCTGCTCTGAAGGGCTCTGATCATCGGAGGGCCACAAATGTTAGTGCC
genomic: ATTCAAGGAAGTCCTCCCCAAGGGTGACAAATGAAGCTGTCCAAAAGGCCgtaagtgctc ... attttcttagGCTGCTGCTCTGAAGGGCTCTGATCATCGGAGGGCCACAAATGTTAGTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTTTTTTCTGCTAATGCTGCTGCCTTGGATTCAAGGAAGTCCTCCCCAAGGGTGACAAATGAAGCTGTCCAAAAGGCCgtaagtgctcatcaggattttcaatttgttcttttacttgataaattttattttagaagaattcttaaacctgtttgttttattttcttag
- - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG