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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAGATTGACTGTTGGGTTATGAATGTTGTTCCTGTCAGTGGATTTAATACCTTGCCTGTTATATATGACCGCGGGCTGACAGGAGTTATGCATGATTGgtatgaaaaatttgcttggatatctgttgagttatttttaaatgtgattggtgatttcatactgtgtgaagttgccattgtaaccgcataataatctaag...

Basic information

species Glycine max
transcript GLYMA13G09520.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G09520.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G77260.1 (Arabidopsis thaliana), 5'ss of exon 7
TCCAGATTGACTGTTGGGTTATGAATGTTGTTCCTGTCAGTGGATTTAATACCTTGCCTGTTATATATGACCGCGGGCTGACAGGAGTTATGCATGATTGgtatgaaaaatttgcttggatatctgttgagttatttttaaatgtgattggtgatttcatactgtgtgaagttgccattgtaaccgcataataatctaag
|   | |||||||||||||||||||  ||||||| || || ||||| || |||||||| ||||| |||||||| || ||   ||| | |||||| || |||||   |    |  | |     ||| |||  || |  |   |  | | |     || || |   |    | ||     | |   | | || |      ||
TGGGGCTTGACTGTTGGGTTATGAACATTGTTCCCGTTAGCGGATTCAACACCTTGCCAGTTATTTATGACCGTGGACTACAAGGGGCTATGCACGACTGgtacagactgataaccttctgctcttttgc-ttctaatcccacataactttaacttacacaagat-cacatttaaagcttttttcacttacttcctctag

upper sequence: GLYMA13G09520.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv18s0001g01600.t01 (Vitis vinifera), 5'ss of exon 7
TCCAGATTGACTGTTGGGTTATGAATGTTGTTCCTGTCAGTGGATTTAATACCTTGCCTGTTATATATGACCGCGGGCTGACAGGAGTTATGCATGATTGgtatgaaaaatttgcttggatatctgttgagttatttttaaatgtgattggtgatttcat-actgtgtgaagttgccattgtaaccgcataataatctaag---
||||  |||| || |||||||||||||||||||| || |||||||| || ||| ||||||| || ||||| || || || | |||||||| |||||| |||||||    |    | |   | ||   ||| ||  |||||    |   |  |  |  ||| | |   |  | |  |     | | |  |  ||  | ||||   
TCCAAGTTGATTGCTGGGTTATGAATGTTGTTCCAGTTAGTGGATTCAACACCCTGCCTGTAATCTATGATCGTGGACTCATAGGAGTTAGGCATGACTGgtatgtgctaagcacct---tttcctgtgaattgcttttagtatttgctttttctaacatcatttccttgaatatctcaaatcatcaga-gatgctgtaagccc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10843898|gb|BF067255.1|BF067255
EST:     ACCTTGCCTGTTATATATGACCGCGGGCTGACAGGAGTTATGCATGATTG                         GTGTGAACCATTTGATACATACCCAAGAACATATGATCTGCTGCACGCTGC
genomic: ACCTTGCCTGTTATATATGACCGCGGGCTGACAGGAGTTATGCATGATTGgtatgaaaaa ... accttgacagGTGTGAACCATTTGATACATACCCAAGAACATATGATCTGCTGCACGCTGC
EST: gi|13481740|gb|BG511083.1|BG511083
EST:     ACCTTGCCTGTTATATATGACCGCGGGCTGACAGGAGTTATGCATGATTG                         GTGTGAACCATTTGATACATACCCAAGAACATATGATCTGCTGCACGCTGC
genomic: ACCTTGCCTGTTATATATGACCGCGGGCTGACAGGAGTTATGCATGATTGgtatgaaaaa ... accttgacagGTGTGAACCATTTGATACATACCCAAGAACATATGATCTGCTGCACGCTGC
EST: gi|151412439|gb|EV282251.1|EV282251
EST:     ACCTTGCCTGTTATATATGACCGCGGGCTGACAGGAGTTATGCATGATTG                         GTGTGAACCATTTGATACATACCCAAGAACATATGATCTGCTGCACGCTGC
genomic: ACCTTGCCTGTTATATATGACCGCGGGCTGACAGGAGTTATGCATGATTGgtatgaaaaa ... accttgacagGTGTGAACCATTTGATACATACCCAAGAACATATGATCTGCTGCACGCTGC