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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAGAACCAGGAGGTGATTGCTGAACTTGTTGACCAGTGTCGCTCATACCAAAAGCGTGTTATGCTTCTTGTAAATGAGACTTCgtaagaatattctttaagatgaccaagtccaatttgtctgtgtaattaagaagaatggctgtaatgtttgtgttaagatatgatatgatagagatttagg...

Basic information

species Glycine max
transcript GLYMA13G09390.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G09390.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv18s0001g01180.t01 (Vitis vinifera), 5'ss of exon 7
GTTGAGAACCAGGAGGTGATTGCTGAACTTGTTGACCAGTGTCGCTCATACCAAAAGCGTGTTATGCTTCTTGTAAATGAGACTTCgtaagaat--attctttaagatgaccaagtccaatttgtctgtgtaattaagaagaatggctgtaatgtttgtgttaagatatgata-tgatagagatttagg----------
  || |||  | || ||||||| ||| |||||||||||||| |||   |||||||||||||| ||||||||||| ||||| |||  ||| || |  | |||||    |       ||   ||| |   | |   |  | ||  |  || || | |     | ||   |||||| |||||  |   | |           
AGTGTGAAGGACGAAGTGATTGTTGACCTTGTTGACCAGTGCCGCAATTACCAAAAGCGTGTCATGCTTCTTGTGAATGATACTGTgtacgattttactcttttttttctttctttctttttttttcttttccctttgcagtctttctttattttgaacttgaattgatgatactgataaggtggttgcttttctttag