1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTACTTGGAGGGTAGGAGGGGTGCTAGCAATGTCTCGTGCCTTTGGTAACCGCATGCTGAAGCAGTTTGTAGTAGCAGAACCTGAGATCCAGgtgatccttgattactgtgtgcaatctgagtatatagtctattaattgctagagatgattcactctaataattattttcactgtatggattaataacttt...
species | Glycine max |
transcript | GLYMA13G08090.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTGGTAACCGCATGCTGAAGCAGTTTGTAGTAGCAGAACCTGAGATCCAG GACCAGGAGATAGATGAACAAATTGAATTGCTTATTCTTGCAAGTGATGGAEST: gi|209700605|gb|BW670421.1|BW670421
genomic: TTGGTAACCGCATGCTGAAGCAGTTTGTAGTAGCAGAACCTGAGATCCAGgtgatccttg ... atactttcagGACCAGGAGATAGATGAACAAATTGAATTGCTTATTCTTGCAAGTGATGGA
EST: TTGGTAACCGCATGCTGAAGCAGTTTGTAGTAGCAGAACCTGAGATCCAG GACCAGGAGATAGATGAACAAATTGAATTGCTTATTCTTGCAAGTGATGGAEST: gi|5508875|gb|AI855433.1|AI855433
genomic: TTGGTAACCGCATGCTGAAGCAGTTTGTAGTAGCAGAACCTGAGATCCAGgtgatccttg ... atactttcagGACCAGGAGATAGATGAACAAATTGAATTGCTTATTCTTGCAAGTGATGGA
EST: TTGGTAACCGCATGCTGAAGCAGTTTGTAGTAGCAGAACCTGAGATCCAG GACCAGGAGATAGATGAACAAATTGAATTGCTTATTCTTGCAAGTGATGGAEST: gi|13481405|gb|BG510748.1|BG510748
genomic: TTGGTAACCGCATGCTGAAGCAGTTTGTAGTAGCAGAACCTGAGATCCAGgtgatccttg ... atactttcagGACCAGGAGATAGATGAACAAATTGAATTGCTTATTCTTGCAAGTGATGGA
EST: TGGTAACCGCATGCTGAAGCAGTTATG-AGTAGCAGAACCTGAGATCCAG GACCAGGAGATAGATGAACAAATTGAATTGCTTATTCTTGCAAGTGATGGA
genomic: TGGTAACCGCATGCTGAAGCAGTT-TGTAGTAGCAGAACCTGAGATCCAGgtgatccttg ... atactttcagGACCAGGAGATAGATGAACAAATTGAATTGCTTATTCTTGCAAGTGATGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACTTGGAGGGTAGGAGGGGTGCTAGCAATGTCTCGTGCCTTTGGTAACCGCATGCTGAAGCAGTTTGTAGTAGCAGAACCTGAGATCCAGgtgatccttgattactgtgtgcaatctgagtatatagtctattaattgctagagatgattcactctaataattattttcactgtatggattaataacttt
- - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC