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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGATGAGGAGATTCTTCAGGAAGTGGTTAATATGGGATTTGACAGGAATCAATTGGTTGAATCTCTTAGCAACAGGATACAAAATGAGgtttgtgatcttttattttcacctcaagtgtacctgccagattgtctcatctcactgtctgtatttcag

Basic information

species Glycine max
transcript GLYMA13G05700.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G05700.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv14s0108g01230.t01 (Vitis vinifera), 5'ss of exon 7
ATTGATGAGGAGATTCTTCAGGAAGTGGTTAATATGGGATTTGACAGGAATCAATTGGTTGAATCTCTTAGCAACAGGATACAAAATGAGgtttgtgatcttttatt-ttcacctcaagtgtacctgccagattgtctc-atctcactgtctgtatttcag---------------------------------------------------
|||||||||||||||||||||||||||||||| ||||||||||||||||||| | | |||||||||||| |||||||  |||||||||| || |   ||   | |   ||||       |||  ||     ||  ||   ||| ||        |    |                                                    
ATTGATGAGGAGATTCTTCAGGAAGTGGTTAAGATGGGATTTGACAGGAATCTACTTGTTGAATCTCTTCGCAACAGAGTACAAAATGATgtataccattcctgacccttcaaactccttgtgtcttttctatcctccagatcccaaaaaaaaaaaaaaaacttattataattttccaattctgctttctgagttcttgcaaaatatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193417616|gb|FK382986.1|FK382986
EST:     TGACAGGAATCAATTGGTTGAATCTCTTAGCAACAGGATACAAAAATGAG                         GGTACTGTAACATACTATTTGTTATTGGACAACCGGTTTCGTGTTTCTAG
genomic: TGACAGGAATCAATTGGTTGAATCTCTTAGCAACAGGATAC-AAAATGAGgtttgtgatc ... tgtatttcagGGTACTGTAACATACTATTTGTTATTGGACAACCGGTTTCGTGTTTCTAG
EST: gi|208218482|gb|GE020490.1|GE020490
EST:     CTTAGCAACAGGATACAAAATGAG                         GGTACTGTAACATACTATTTGTTTATTGGACAACCGGTTTCGTGTTTCGAG
genomic: CTTAGCAACAGGATACAAAATGAGgtttgtgatc ... tgtatttcagGGTACTGTAACATACTATTTG-TTATTGGACAACCGGTTTCGTGTTTCTAG
EST: gi|193323651|gb|FK290503.1|FK290503
EST:     TTGACAGGAATCAATTGGTTGAATCTCTTAGCAACAGGATACAAAATGAG                         GGTACTGTAACATACTATTTGTTATTGGACAACCGGTTTCGTGTTTCTAGT
genomic: TTGACAGGAATCAATTGGTTGAATCTCTTAGCAACAGGATACAAAATGAGgtttgtgatc ... tgtatttcagGGTACTGTAACATACTATTTGTTATTGGACAACCGGTTTCGTGTTTCTAGT
EST: gi|193727656|gb|FK664496.1|FK664496
EST:     TTGACAGGAATCAATTGGTTGAATCTCTTAGCAACAGGATACAAAATGAG                         GGTACTGTAACATACTATTTGTTATTGGACAACCGGTTTCGTGTTTCTAGT
genomic: TTGACAGGAATCAATTGGTTGAATCTCTTAGCAACAGGATACAAAATGAGgtttgtgatc ... tgtatttcagGGTACTGTAACATACTATTTGTTATTGGACAACCGGTTTCGTGTTTCTAGT
EST: gi|193621277|gb|FK566803.1|FK566803
EST:     TTGACAGGAATCAATTGGTTGAATCTCTTAGCAACAGGATACAAAATGAG                         GGTACTGTAACATACTATTTGTTATTGGACAACCGGTTTCGTGTTTCTAGT
genomic: TTGACAGGAATCAATTGGTTGAATCTCTTAGCAACAGGATACAAAATGAGgtttgtgatc ... tgtatttcagGGTACTGTAACATACTATTTGTTATTGGACAACCGGTTTCGTGTTTCTAGT
EST: gi|208219813|gb|GE018937.1|GE018937
EST:     CTTAGCAACAGGATACAAAATGAG                         GGTACTGTAACATACTATTTGTTATTGGACAACCGGTTTCGTGTTTCGAGT
genomic: CTTAGCAACAGGATACAAAATGAGgtttgtgatc ... tgtatttcagGGTACTGTAACATACTATTTGTTATTGGACAACCGGTTTCGTGTTTCTAGT