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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGGTCTTACAGAGACTTGTGCTGGTGGGACATTCTCTGATGTTGATGATACATCTGTCGGCCGTGTTGGACCACCTCTTCCATGCTCATTTATTAAGgtaattatagatctgatcaattttatcttcatacaacttgaatgacacattttttatgatggcttggggggagggagtaatatggtagcatggtagtttg...

Basic information

species Glycine max
transcript GLYMA13G03280.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G03280.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G118286_T01 (Zea mays), 5'ss of exon 8
ATATGGTCTTACAGAGACTTGTGCTGGTGGGACATTCTCTGATGTTGATGATACATCTGTCGGCCGTGTTGGACCACCTCTTCCATGCTCATTTATTAAGgt-aattatagatctgatcaattttatcttcatacaacttgaatgac-acattttttatgatggcttggggggagggagtaatatggtagcatggtagtttg
 |||||||| || || ||||||||||| |||||||| || ||   |||||| ||||||||||| ||||||||  | || || || || || | ||||||||| |  |  |  ||| | | ||||| | |  |  |   ||  || || |  || | | ||  |   |     |      | ||     |  ||| | ||   
TTATGGTCTGACTGAAACTTGTGCTGGAGGGACATTTTCAGAGTATGATGACACATCTGTCGGTCGTGTTGGTGCTCCACTACCTTGTTCGTATATTAAGgtcagcttcatttcttaactattttgtatcaaagctgtttttatcacgatgttatctgtgcggatctattttgtattttttatgcctaacaatgtttgta--

upper sequence: GLYMA13G03280.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G77590.1 (Arabidopsis thaliana), 5'ss of exon 8
ATATGGTCTTACAGAGACTTGTGCTGGTGGGACATTCTCTGATGTTGATGATACATCTGTCGGCCGTGTTGGACCACCTCTTCCATGCTCATTTATTAAGgtaat-tatagatctgatcaattttatcttcatacaacttgaatgacacattttttatgatggcttggggggagggagtaatatggtagcatggtagtttg-
|||||| || |||||||||||||||||||| || ||||| ||  |||| || ||||| || |||||||||||  | || ||||| ||||| ||| | |||||||  | |  | |||||   |    | || ||||    | |   |   |||  ||   ||| | | |      |   | ||||| |   ||  |  ||   
ATATGGGCTCACAGAGACTTGTGCTGGTGGAACCTTCTCGGAGTTTGAGGACACATCCGTTGGCCGTGTTGGTGCTCCACTTCCTTGCTCCTTTGTAAAGgtaacctctttacctgatttgtccacttttaatactttgttagctatttattagtttgtatgtcgtagtctcttgtgatcatatgcttatatcttgtttcag

upper sequence: GLYMA13G03280.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv18s0001g02810.t01 (Vitis vinifera), 5'ss of exon 9
ATATGGTCTTACAGAGACTTGTGCTGGTGGGACATTCTCTGATGTTGATGATACATCTGTCGGCCGTGTTGGACCACCTCTTCCATGCTCATTTATTAAGgtaattatagatctgatcaattttatcttcatacaacttgaatgacacatttt----ttatgatggcttggggggagggagtaatatggtagcatggtagtttg--
 ||||| || ||||||| |||||||||||| ||||| || ||   ||||||||||||||| || ||||||||  | || ||||| |||||||||||||||||||   | |||   |  | |||||  | |||    ||| ||||  | || ||     ||     ||           ||  |   ||  | | ||||||      
GTATGGCCTGACAGAGAGTTGTGCTGGTGGTACATTTTCCGAGTATGATGATACATCTGTTGGTCGTGTTGGTGCTCCACTTCCTTGCTCATTTATTAAGgtaa--gtggatgaaaata-ttttacttgcatgtg-ctttaatgcgagatcttggacctacatgtgcacttcctagctgaaaaccctg--accttggtagaaaaca

upper sequence: GLYMA13G03280.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S15_17V6.1 (Physcomitrella patens), 5'ss of exon 7
ATATGGTCTTACAGAGACTTGTGCTGGTGGGACATTCTCTGATGTTGATGATACATCTGTCGGCCGTGTTGGACCACCTCTTCCATGCTCATTTATTAAGgtaat-----tatagatctgatcaattttatcttcata-caacttgaatgacacattttttatgatggcttggggggagggagtaatatggtagcatggtagtttg
 |||||| | ||||||||||||||||||||||||||| | ||    ||||||   || ||  | ||||  || || ||    ||   ||  |   | |||||| |        | |  |      ||||  |||| |  | |     |||   | |      || | | |      |   | ||||| |||| | || |||     
CTATGGTTTAACAGAGACTTGTGCTGGTGGGACATTCACCGAATGGGATGATCGCTCCGTTCGTCGTGCGGGGCCTCCGACACCTCACTGCTACGTCAAGgtactattcccgcaaacattcattgtttttccttcttgtcgaacaagatggatcgtgaaccgtgttcgttaaatttgtaagggtaat-tggttg-attgtaa----