Sequence
atgc intronic sequence ATGC exonic sequenceGAATTGTCTGCAAAGACAAAAATATTCTTTTCCACAGCAGTTGCAAAATGGGATGCGGATTTCTATGTCAAAGTGGATGATGATGTCCATGTCAATTTAGgtatgtgctgtctccatatttcttgacatttttcttgtgtttccatgccattgtttccttcactactttcttcccccattcccctcacaagtaaggtttcttataacaattgctgccatatag
Basic information
species | Glycine max |
transcript | GLYMA13G02420.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G02420.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os09g27950.1 (Oryza sativa), 5'ss of exon 7
GAATTGTCTGCAAAGACAAAAATATTCTTTTCCACAGCAGTTGCAAAATGGGATGCGGATTTCTATGTCAAAGTGGATGATGATGTCCATGTCAATTTAGgtatgtgctgtctccatatttcttgacatttttcttgtgtttccatgccattgtttccttcactactttcttcccccattcccctcacaagtaaggtttcttataacaattgctgccatatag
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GAGCTATCTGCAAAGACCAAGATATTCTTTTCCACTGCTGTGGCATTATGGGATGCTGATTTCTATGTCAAGGTGGATGATGATGTTCATGTCAACCTTGgtaagctttattatt-tagcctttgaccttgatgagagatttgttattcagtaattaactgatgggagtgatgcag-----------------------------------------------
upper sequence: GLYMA13G02420.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ20056 (Selaginella moellendorffii), 5'ss of exon 8
GAATTGTCTGCAAAGACAAAAATATTCTTTTCCACAGCAGTTGCAAAATGGGATGCGGATTTCTATGTCAAAGTGGATGATGATGTCCATGTCAATTTAGgtatgtgctgtctccatatttcttgacatttttcttgtgtttccatgccattgtttccttcactactttcttcccccattcccctcacaagtaaggtttcttataacaattgctgccatatag
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GAGTTGTCTGCCAAAACCAAAATCTACTTTTCCACAGCTGTGGCAAAATGGGATGCCGACTTTTACGTCAAAGTAGATGACGATGTTCATGTAAACTTAGgtgggtga-------acaattgcctgcgactatagtaagttgtt-tacctttcttcactttgacag---------------------------------------------------------
upper sequence: GLYMA13G02420.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ30358 (Selaginella moellendorffii), 5'ss of exon 7
GAATTGTCTGCAAAGACAAAAATATTCTTTTCCACAGCAGTTGCAAAATGGGATGCGGATTTCTATGTCAAAGTGGATGATGATGTCCATGTCAATTTAGgtatgtgct-gtctccatatttcttgacatttttcttgtgtttccatgccattgtttccttcactactttcttcccccattcccctcacaagtaaggtttcttataacaattgctgccatatag
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GAGCTGTCGGCAAAAACGAAGATCTACTTTTCTACAGCTGTTGCTAAATGGGATGCGGAATTCTACGTCAAAGTCGACGACGATGTCCATGTGAATATCGgtaagtgccagtcctgaaagctgcttctagttgtgctagcatttaagcttgcag----------------------------------------------------------------------
upper sequence: GLYMA13G02420.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ28470 (Selaginella moellendorffii), 5'ss of exon 7
GAATTGTCTGCAAAGACAAAAATATTCTTTTCCACAGCAGTTGCAAAATGGGATGCGGATTTCTATGTCAAAGTGGATGATGATGTCCATGTCAATTTAGgtatgtgct-gtctccatatttcttgacatttttcttgtgtttccatgccattgtttccttcactactttcttcccccattcccctcacaagtaaggtttcttataacaattgctgccatatag
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GAGCTGTCCGCAAAAACGAAGATCTACTTTTCTACAGCTGTTGCTAAATGGGATGCGGAATTCTACGTCAAAGTCGACGACGATGTCCATGTGAATATCGgtaagtgccagtcctgaaagctgcttctagttgtgctagcatttaagcttgcag----------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151401991|gb|EV271804.1|EV271804EST: GGATGCGGATTTCTATGTCAAAGTGGATGATGATGTCCATGTCAATTTAG GTGTACTTGAAACAACCCTTGCTCGTCACCGTTCAAAACCAAGGATCTACA
genomic: GGATGCGGATTTCTATGTCAAAGTGGATGATGATGTCCATGTCAATTTAGgtatgtgctg ... tgccatatagGTGTACTTGCAACAACCCTTGCTCGTCACCGTTCAAAACCAAGGATCTACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAATTGTCTGCAAAGACAAAAATATTCTTTTCCACAGCAGTTGCAAAATGGGATGCGGATTTCTATGTCAAAGTGGATGATGATGTCCATGTCAATTTAGgtatgtgctgtctccatatttcttgacatttttcttgtgtttccatgccattgtttccttcactactttcttcccccattcccctcacaagtaaggtttcttataacaattgctgccatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA