Sequence
atgc intronic sequence ATGC exonic sequenceGGGGGAAGCGTCTTGTGCCAGTGGGCCTAGGAGATGATGATCAATGCATTGAGGATGACTTTACTGCATGgtattgaaataattaattaagttgacatgaatatactggagcaggaatcttttttttatgctttatttccctccttccctaactatgactgttattgcag
Basic information
species | Glycine max |
transcript | GLYMA13G00990.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G00990.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os08g14570.1 (Oryza sativa), 5'ss of exon 6
GGGGGAAGCGTCTTGTGCCAGTGGGCCTAGGAGATGATGATCAATGCATTGAGGATGACTTTACTGCATGgtattgaaataattaattaagttgacatgaatatactggagcaggaatcttttttttatgctttattt-ccctccttccctaactatgac-tgttattgcag
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GTGGAAAACGTCTTGTTCCGGTTGGTCTTGGAGATGATGATCAATGCATTGAGGATGACTTCAACGCATGgtac-gcattatcttgctctttcaagcttattttagttattttaggcatttccgcacttgtgttacttacattcctttctgaacttttacatatcaccag--
upper sequence: GLYMA13G00990.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G144407_T01 (Zea mays), 5'ss of exon 7
GGGGGAAGCGTCTTGTGCCAGTGGGCCTAGGAGATGATGATCAATGCATTGAGGATGACTTTACTGCATGgtat-tgaaataattaatt--aagttgaca---tgaatatactggagcaggaatct---tttttttatgctttatttccctccttccctaactatgactgttattgcag------------------
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GCGGAAAGCGCCTTGTTCCAGTTGGTCTTGGAGATGATGACAAATGCATTGAGGATGACTTCAACACATGgtacatattctggtttcttttgagctctctctctctctgttttttttttggcatttgactgcttcagtgttatttatgctgcattgtttgaacttgaagttgaactctgttgtgttcttatatttag
upper sequence: GLYMA13G00990.1 (Glycine max), 5'ss of exon 7
lower sequence: AC217947.4_FGT002 (Zea mays), 5'ss of exon 6
GGGGGAAGCGTCTTGTGCCAGTGGGCCTAGGAGATGATGATCAATGCATTGAGGATGACTTTACTGCATGgtattgaaataattaattaagttgacatgaatatactggagcaggaatcttttttttatgctttatttccctccttccctaactatgac-tgttattgcag
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GTGGAAAGCGCCTTGTTCCAGTTGGTCTTGGGGACGATGACCAATGCATTGAGGATGACTTCAATGCATGgtac--atattctggtttcttttgagctctttttttttgacatttgactgcttcagtgttatttacgttgct--tttctgaactctgatgtgttcttag--
upper sequence: GLYMA13G00990.1 (Glycine max), 5'ss of exon 7
lower sequence: AT4G30210.1 (Arabidopsis thaliana), 5'ss of exon 7
GGGGGAAGCGTCTTGTGCCAGTGGGCCTAGGAGATGATGATCAATGCATTGAGGATGACTTTACTGCATGgtattgaaataattaattaagttgacatgaatatactggagcaggaatcttttttttatgctttatttccctccttccctaactatgactgttattgcag
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GTGCACAGCGTCTTGTACAAGTTGGTCTTGGAGATGATGACCAGTGTATTGAAGATGACTTTACCGCTTGgtatt----ttacatttccacttctcgtggcttatcgtgtaca---atgctgttttggtcatttgttttt-tggggggctaaatttgctacctcttgcag
upper sequence: GLYMA13G00990.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv11s0052g00880.t01 (Vitis vinifera), 5'ss of exon 7
GGGGGAAGCGTCTTGTGCCAGTGGGCCTAGGAGATGATGATCAATGCATTGAGGATGACTTTACTGCATGgtattgaaat-aattaattaagttgacatgaatatactggagcaggaatcttttttttatgctttatttccctccttccctaact--atgactgttattgcag
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GTGGAAAGCGCATTGTCCCAGTGGGTCTTGGGGATGATGACCAATGCATTGAGGATGACTTCGCTGCATGgtacaaaaattgaatcactacccgga-atatacaatgtgttgatgtgcattcccttttatattaaaataatcttatatcttatgtcaactgttgctattctagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209729001|gb|BW655031.1|BW655031EST: TGGGCCTAGGAGATGATGATNCA-TGCATTGAGGATGACTTTACTGCATG GAAAGA-GAACTCTGGCCAGCATTGGATGACTTGC
genomic: TGGGCCTAGGAGATGATGAT-CAATGCATTGAGGATGACTTTACTGCATGgtattgaaat ... gttattgcagGAAAGAAGAACTCTGGCCAGCATTGGATGACTTGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGGGAAGCGTCTTGTGCCAGTGGGCCTAGGAGATGATGATCAATGCATTGAGGATGACTTTACTGCATGgtattgaaataattaattaagttgacatgaatatactggagcaggaatcttttttttatgctttatttccctccttccctaactatgactgttattgcag
- - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - AGGATG