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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCATGAGAGATCCTGAGACAGGAAATTCCCGTGGTTTTGGCTTCATTAGCTATGATTCATTTGAGGCATCTGATTCAGCCATTGAGgtatgcctcagtctagtgtttgagtcatttgtaggaatatagtgtgaggccaacctttcattcttttgttatacttattcagcacatgtggatcttgaat...

Basic information

species Glycine max
transcript GLYMA12G36950.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G36950.1 (Glycine max), 5'ss of exon 7
lower sequence: AT2G18510.1 (Arabidopsis thaliana), 5'ss of exon 7
ATCATGAGAGATCCTGAGACAGGAAATTCCCGTGGTTTTGGCTTCATTAGCTATGATTCATTTGAGGCATCTGATTCAGCCATTGAGgtatgcctcagtctagtgtttgagtc--atttgtaggaatatagt-------gtgaggccaacct--ttcattcttttgttatacttattcagcacatgtggatcttgaat------------------------------
|| ||||||||||| || || ||||| || || |||||||| ||||| |||||||| || ||||| ||||||||| | || |||||||||    || |  |  |   | | ||  | || || |||  |  |         ||| ||||  |  ||||  | |||    |      | | |  ||       | | ||                              
ATAATGAGAGATCCCGATACTGGAAACTCACGAGGTTTTGGTTTCATCAGCTATGACTCCTTTGAAGCATCTGATGCTGCTATTGAGgtaattatctgcttctttcataactctcagttctatgaacttgcttacgaaaaggagcccaatatatttcacacatttaacttctccgattacctaatccaatggtagtatattcctctgatctttgtctgactattgcag

upper sequence: GLYMA12G36950.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0023g01470.t01 (Vitis vinifera), 5'ss of exon 7
ATCATGAGAGATCCTGAGACAGGAAATTCCCGTGGTTTTGGCTTCATTAGCTATGATTCATTTGAGGCATCTGATTCAGCCATTGAGgtatgcctcagtctagtgtttgagtcatttgtaggaatatagtgtgaggccaacctttcattcttttgttatacttattcagcacatgtggatcttgaat----
|| |||||||||||||| ||||||||||| ||||||||||| ||| |||||||||| || ||||||||||||||| |||| ||||||||||   ||    |  || |    |||| |  |   |  | || | |         || |    |  |  | ||  |||||| |  || |  |  ||| |    
ATAATGAGAGATCCTGATACAGGAAATTCTCGTGGTTTTGGTTTCGTTAGCTATGACTCTTTTGAGGCATCTGATGCAGCTATTGAGgtatatatct-cttgatgatattttcatat-catttaggtggttttaactttctgcttaagctatgagaaacaca-attcagtatttg-gattaatgattggct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193644982|gb|FK588802.1|FK588802
EST:     TTGGCTTCATTAGCTATGATTCATTTGAGGCATCTGATTCAGCCATTGAG                         GCAATGAATGGACAATATCTTTGCAATCGTCAAATTACAGTGTCATATGCT
genomic: TTGGCTTCATTAGCTATGATTCATTTGAGGCATCTGATTCAGCCATTGAGgtatgcctca ... tattttgtagGCAATGAATGGACAATATCTTTGCAATCGTCAAATTACAGTGTCATATGCT
EST: gi|18040641|gb|BM308944.1|BM308944
EST:     TTGGCTTCATTAGCTATGATTCATTTGAGGCATCTGATTCAGGCATTGAG                         GCAATGAATGGACCATATCTTTGCAATCGTCCAATTACAGTGTCATATGCT
genomic: TTGGCTTCATTAGCTATGATTCATTTGAGGCATCTGATTCAGCCATTGAGgtatgcctca ... tattttgtagGCAATGAATGGACAATATCTTTGCAATCGTCAAATTACAGTGTCATATGCT