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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCACAGATAACACTTTGAAGCTTTGGGATTTGTCTACATGTGCATCTCGAGTTATAGACTCACCGATTCAATCATTCACTGGTCACGCGAATGTTAAGgtatatctgcagacaaaagtaacttgtgtcttcactgccatgagtttttagttatatttgcccaagggtttgttttattatggtcagccatatgttgagg...

Basic information

species Glycine max
transcript GLYMA12G35320.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|57575187|gb|CX548162.1|CX548162
EST:     GAGTTATAGACTCACCGATTCAATCATTCACTGGTCACGCGAATGTTAAG                         AACTTTGTGGGGTTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAG
genomic: GAGTTATAGACTCACCGATTCAATCATTCACTGGTCACGCGAATGTTAAGgtatatctgc ... tgtcttgcagAACTTTGTGGGGTTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAG
EST: gi|58019897|gb|CX706639.1|CX706639
EST:     GAGTTATAGACTCACCGATTCAATCATTCACTGGTCACGCGAATGTTAAG                         AACTTTGTGGGGTTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAG
genomic: GAGTTATAGACTCACCGATTCAATCATTCACTGGTCACGCGAATGTTAAGgtatatctgc ... tgtcttgcagAACTTTGTGGGGTTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAG
EST: gi|10238749|gb|BE807637.1|BE807637
EST:     CACCGATTCAATCATTCACTGGTCACGCGAATGTTAAG                         AACTTTGTGGGGTTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAG
genomic: CACCGATTCAATCATTCACTGGTCACGCGAATGTTAAGgtatatctgc ... tgtcttgcagAACTTTGTGGGGTTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAG
EST: gi|10845522|gb|BF068626.1|BF068626
EST:     GAGTTATAGACTCACCGATTCAATCATTCACTGGTCACGCGAATGTTAAG                         AACTTTGTGGGGTTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAG
genomic: GAGTTATAGACTCACCGATTCAATCATTCACTGGTCACGCGAATGTTAAGgtatatctgc ... tgtcttgcagAACTTTGTGGGGTTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAG
EST: gi|207737976|gb|GD715656.1|GD715656
EST:     GAGTTATAGACTCACCGATTCAATCATTCACTGGTCACGCGAATGTTAAG                         AACTTTGTGGGGTTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAG
genomic: GAGTTATAGACTCACCGATTCAATCATTCACTGGTCACGCGAATGTTAAGgtatatctgc ... tgtcttgcagAACTTTGTGGGGTTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAG
EST: gi|193633517|gb|FK579225.1|FK579225
EST:     GAGTTATAGACTCACCGATTCAATCATTCACTGGTCACGCGAATGTTAAG                         AACTTTGTGGGGTTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAG
genomic: GAGTTATAGACTCACCGATTCAATCATTCACTGGTCACGCGAATGTTAAGgtatatctgc ... tgtcttgcagAACTTTGTGGGGTTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAG
EST: gi|193568733|gb|FK527086.1|FK527086
EST:     GAGTTATAGACTCACCGATTCAATCATTCACTGGTCACGCGAATGTTAAG                         AACTTTGTGGGGTTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAG
genomic: GAGTTATAGACTCACCGATTCAATCATTCACTGGTCACGCGAATGTTAAGgtatatctgc ... tgtcttgcagAACTTTGTGGGGTTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCCACAGATAACACTTTGAAGCTTTGGGATTTGTCTACATGTGCATCTCGAGTTATAGACTCACCGATTCAATCATTCACTGGTCACGCGAATGTTAAGgtatatctgcagacaaaagtaacttgtgtcttcactgccatgagtttttagttatatttgcccaagggtttgttttattatggtcagccatatgttgagg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagtaa