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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATCGTGCCCCAGAGCTAATATTTGGTGCGGCAGAATACACAACTTCTGTTGATATTTGGTCCGCTGGTTGTGTCCTTGCGGAACTTCTTCTAGGCCAGgttgttaaaattttaggcaacctatgcactaatgttgttcatacataacatgtttttctgtgtttatgagaaatgttatcttggcttctcaatagtttcaaaatatttctttatag

Basic information

species Glycine max
transcript GLYMA12G33950.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G33950.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv12s0028g01810.t01 (Vitis vinifera), 5'ss of exon 7
CTATCGTGCCCCAGAGCTAATATTTGGTGCGGCAGAATACACAACTTCTGTTGATATTTGGTCCGCTGGTTGTGTCCTTGCGGAACTTCTTCTAGGCCAGgttgttaaaattttaggcaacctatgcactaatgttgttcatacataacatg----tttttctgtgtttatgagaaatgttatcttggcttctcaa--tagtttcaaaat----atttctttatag
||| || |||||||| || |||||||||||  | ||||||||||| ||  ||||||||||||| |||||||||||  |||| || ||||| ||||||||||||  |     | |  | ||  |||    |  ||||    | |  |  |       ||||| |  ||| || |      |  |  |   |  |     || ||||| |||    | |  ||   ||
CTACCGGGCCCCAGAACTTATATTTGGTGCAACTGAATACACAACATCGATTGATATTTGGTCAGCTGGTTGTGTTTTTGCTGAGCTTCTACTAGGCCAGgttagtgg--ctgtgagaaatttatattttgttgttaccaagaattttcccagtgttttttttaagttcattatttgcttagttgtatatcatttgcttactttcacaattgcaaatgtttggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11687934|gb|BF595610.1|BF595610
EST:     TTGATATTTGGTCCGCTGGTTGTGTCCTTGCGGAACTTCTTCTAGGCCAG                         CCTTTGTTCCCAGGAGAAAATCAGGTTGACCAACTCGTGGAAATTATCAAG
genomic: TTGATATTTGGTCCGCTGGTTGTGTCCTTGCGGAACTTCTTCTAGGCCAGgttgttaaaa ... ttctttatagCCTTTGTTCCCAGGAGAAAATCAGGTTGACCAACTCGTGGAAATTATCAAG