Sequence
atgc intronic sequence ATGC exonic sequenceGAATTGTCAGCAAAGACAAAGACATACTTTGCCACTGCTGTTAACTTATGGGATGCTGACTTCTATATCAAAGTTGATGACGATGTTCATGTAAATATAGgtatataaagtttctcaatctctaattatctaaccttgcatgaggagtttgcaattgaaattgttgtatccttttaactagttccacatactaactatcatccatggattcatgttccgtacatacttagtatgcatcatgtaatttctatcttaatatttttcttagtatgccctattcaatcctttttcag
Basic information
species | Glycine max |
transcript | GLYMA12G31980.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G31980.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os06g46570.2 (Oryza sativa), 5'ss of exon 7
GAATTGTCAGCAAAGACAAAGACATACTTTGCCACTGCTGTTAACTTATGGGATGCTGACTTCTATATCAAAGTTGATGACGATGTTCATGTAAATATAGgtatataaagtttctcaatctctaattatctaaccttgcatgaggagtttgcaattgaaattgttgtatccttttaactagttccacatactaactatcatccatggattcatgttccgtacatacttagtatgcatcatgtaatttctatcttaatatttttcttagtatgccctattcaatcctttttcag
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GAATTGTCTGGCAAAACCAAGACATACTTTGCTACAGCTGTTTCTTTATGGGATGCTGACTTCTATGTGAAGGTTGACGATGATGTGCATGTTAATATAGgtg----aagtctttgtgt---tgaacatctgtcctt------------tttaatctgtatggttgtacaaagtaatctatgtctgactgtcatgtttctttctaaagctcttaatata--------------------------------------------------------------------------
upper sequence: GLYMA12G31980.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os02g06840.2 (Oryza sativa), 5'ss of exon 8
GAATTGTCAGCAAAGACAAAGACATACTTTGCCACTGCTGTTAACTTATGGGATGCTGACTTCTATATCAAAGTTGATGACGATGTTCATGTAAATATAGgtatata--aagtttctcaatctctaattatctaaccttgcatgaggagtttgcaattgaaattgttgtatccttttaactagttccacatactaactatcatccatggattcatgttccgtacatacttagtatgcatcatgtaatttctatcttaatatttttcttagtatgccctattcaatcctttttcag
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GCACTATCTGGCAAAACCAAGACATACTTTGCTACGGCTGTTTCATTGTGGGATGCAGACTTTTATGTGAAGGTTGATGATGACGTGCATGTAAACATAGgtaaatctccatatcttttatgcccttctat-tgttcttttttgaacattttatcgatcttaagatgagaggaaagtgatcatatctgtgtgccg-ccatca---------------------------------------------------------------------------------------------
upper sequence: GLYMA12G31980.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G007185_T01 (Zea mays), 5'ss of exon 7
GAATTGTCAGCAAAGACAAAGACATACTTTGCCACTGCTGTTAACTTATGGGATGCTGACTTCTATATCAAAGTTGATGACGATGTTCATGTAAATATAGgtatataaagtttctcaatctctaattat--ctaaccttgcatgaggagtttgcaattgaaattgttgtatccttttaactagttccacatactaactatcatccatggattcatgttccgtacatacttagtatgcatcatgtaatttctatcttaatatttttcttagtatgccctattcaatcctttttcag
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GAGCTGTCAGGGAAAACCAGGACATACTTTGCAACAGCTGTTGCTTTATGGGATGCTAACTTCTATGTGAAGGTTGACGACGATGTACATGTTAATATAGgtattagatttttatgcagtgcctgttattgttgtccttttgctgccggtatgtatttcctttgataggatagttacaagtggtgccaagaacttgtttg-----------------------------------------------------------------------------------------------
upper sequence: GLYMA12G31980.1 (Glycine max), 5'ss of exon 7
lower sequence: AT2G32430.1 (Arabidopsis thaliana), 5'ss of exon 7
GAATTGTCAGCAAAGACAAAGACATACTTTGCCACTGCTGTTAACTTATGGGATGCTGACTTCTATATCAAAGTTGATGACGATGTTCATGTAAATATAGgta---tataaagtttctcaatctctaattatctaaccttgcatgaggagtttgcaattgaaattgttgtatccttttaactagttccacatactaactatcatccatggattcatgttccgtacatacttagtatgcatcatgtaatttctatcttaatatttttcttagtatgccctattcaatcctttttcag
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GAGTTATCAGGCAAAACGAAAACATATTTTTCTACAGCTGTTTCGAAGTGGGATGCAGAGTTCTATGTCAAAGTAGATGATGATGTTCATGTAAATATCGgtaagctgaacaatcttcctacattcaatt-tctatttcccagtttgtatgttgctcacatcaataacgtggtcaattgttttgttgaaaatatctgcag------------------------------------------------------------------------------------------------
upper sequence: GLYMA12G31980.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G05170.2 (Arabidopsis thaliana), 5'ss of exon 7
GAATTGTCAGCAAAGACAAAGACATACTTTGCCACTGCTGTTAACTTATGGGATGCTGACTTCTATATCAAAGTTGATGACGATGTTCATGTAAATATAGgtatataaagtttctcaatctctaattatctaaccttgcatgaggagtttgcaattgaaattgttgtatccttttaactagttccacatactaactatcatccatggattca-tgttccgtacatacttagtatgcatcatgtaatttctatcttaatatttttcttagtatgccctattcaatcctttttcag
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GAGTTGTCAGGCAAGACGAAAACTTACTTTTCTACAGCATTTTCGATGTGGGATGCAGATTTCTATGTCAAAGTAGATGATGATGTTCATGTCAATATAGgta-----agttctaaaatc---aacgaattgaatt---------ggttt----------tctttatgtcattttgcata---ccttatactggcaat-actaatgggttcaatgtttcactgaaat---gtctgcag--------------------------------------------------------
upper sequence: GLYMA12G31980.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv12s0059g00640.t01 (Vitis vinifera), 5'ss of exon 7
GAATTGTCAGCAAAGACAAAGACATACTTTGCCACTGCTGTTAACTTATGGGATGCTGACTTCTATATCAAAGTTGATGACGATGTTCATGTAAATATAGgtatataaagtttctcaatctctaattatctaaccttgcatgaggagtttgcaattgaaattgttgtatccttttaactagttccacatactaactatcatccatggattcatgttccgtacatacttagtatgcatcatgtaatttctatcttaatatttttcttagtatgccctattcaatcctttttcag
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GAACTGTCTGCCAAGACAAAGATATATTTTGCTACTGCTGTTGCTTTGTGGGATGCAGAGTTCTACATTAAAGTTGATGATGATGTCCATGTAAATATAGgtatctaa--tatgttaatctcta-ttatgatttcttttgtgggtgtcatccataataatctgaaaagtcttataatttagttttcctttcttatt-ttagata-----------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|20498515|gb|BQ273445.1|BQ273445EST: GGATGCTGACTTCTATATCAAAGTTGATGACGATGTTCATGTAAATATAG CGACACTGGGACAAACTCTACTGAGACATCGATCAAAACCGCGGGTGTACA
genomic: GGATGCTGACTTCTATATCAAAGTTGATGACGATGTTCATGTAAATATAGgtatataaag ... cctttttcagCGACACTGGGACAAACTCTACTGAGACATCGATCAAAACCGCGGGTGTACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAATTGTCAGCAAAGACAAAGACATACTTTGCCACTGCTGTTAACTTATGGGATGCTGACTTCTATATCAAAGTTGATGACGATGTTCATGTAAATATAGgtatataaagtttctcaatctctaattatctaaccttgcatgaggagtttgcaattgaaattgttgtatccttttaactagttccacatactaactatcatccatggattcatgttccgtacatacttagtatgcatcatgtaatttctatcttaatatttttcttagtatgccctattcaatcctttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG