Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGTAGCAGTTATTCCTGTGCTTCCTCATGGGGTTGTTCAACTTGGTTCTTTCTTTCCTgtaagtccttttcttttgttctgcaattctgaaaagatataatgtacataatatctccaatgattttatcatgctagagaacagaattatggtgagagga...

Basic information

species Glycine max
transcript GLYMA12G31460.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G31460.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0009g00440.t01 (Vitis vinifera), 5'ss of exon 5
ACAGTAGCAGTTATTCCTGTGCTTCCTCATGGGGTTGTTCAACTTGGTTCTTTCTTTCCTgtaagtccttttcttt-tgttctgcaattctgaaaagatataatgtacataatatctccaatgattttatcatgctagagaacagaattatggtgagagga--
||||| ||||| |||||||| ||||||||||| ||  ||||| ||||||| | |||  ||||||||||| || ||  | ||||  |  ||| |||| |  |    |   | ||| ||    | ||| ||     ||      |||  |||| ||    |    
ACAGTTGCAGTCATTCCTGTCCTTCCTCATGGTGTCATTCAATTTGGTTCATCCTTGGCTgtaagtcctctttttcattttcttgatctctcaaaataactccgattgctcatacctg-gcttattgtagggcactcctattcag--ttattgttgatgagtt