Sequence
atgc intronic sequence ATGC exonic sequenceACATTGAGACGTTTGGCTCAAAACAGAGAGGCTGCAAGGAAAAGCCGTCTGAGGAAAAAGgtgagtcctacatatattgttgtacaaattcaactacttgttgagaaataacacttacattgttgcagaaagtggaaactcaaaaggagctttaaatttcactgcattttgtttctgtgtatggaatag
Basic information
species | Glycine max |
transcript | GLYMA12G30990.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G30990.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g64020.2 (Oryza sativa), 5'ss of exon 6
ACATTGAGACGTTTGGCTCAAAACAGAGAGGCTGCAAGGAAAAGCCGTCTGAGGAAAAAGgtgagtcctacatatattgttgtacaaattcaactacttgttgagaaataacacttacattgttgcagaaagtggaaactcaaaaggagctttaaatttcactgcattttgtttctgtgtatggaatag
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ACAGAACGGAGATTAGCGCAAAACAGAGAGGCTGCGAGGAAGAGCAGGCTGAGAAAAAAGgtgacgaaaagaaacccgtgaactcaaacttcaagactagttcaaaag-actgctttc-cgatcgtgtgtttttttttctcgcag--------------------------------------------
upper sequence: GLYMA12G30990.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os05g37170.3 (Oryza sativa), 5'ss of exon 6
ACATTGAGACGTTTGGCTCAAAACAGAGAGGCTGCAAGGAAAAGCCGTCTGAGGAAAAAGgtgagtcctacatatattgttgtacaaattcaactacttgttgagaaataacacttacattgttgcagaaagtggaaactcaaaaggagctttaaatttcactgcattttgtttctgtgtatggaatag
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ACTGAAAGGCGATTGGCTCAGAACAGAGAAGCTGCAAGAAAGAGCAGGCTGAGGAAAAAGgtttgaaacaaaatcatag-----caaagttaagttttttttataaggaaaaagaaactatgtttgacaaagaatttacacatatgttgcag-------------------------------------
upper sequence: GLYMA12G30990.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G08320.1 (Arabidopsis thaliana), 5'ss of exon 7
ACATTGAGACGTTTGGCTCAAAACAGAGAGGCTGCAAGGAAAAGCCGTCTGAGGAAAAAGgtgagtcctacatatattgttgtacaaattcaactacttgttgagaaataacacttacattgttgcagaaagtggaaactcaaaaggagctttaaatttcactgcattttgtttctgtgtatggaatag
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ACGTTGAGACGTTTGGCCCAAAATAGAGAAGCTGCTCGCAAAAGCCGTCTTAGGAAAAAGgtatgacc-----atataattgcctgacttt--tcacctc-----aaattattatcat-ttgtttttgtttttttgacct-------atttatatattctttgctactttttccaaatga---------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27424595|gb|CA936115.1|CA936115EST: GTTTGGCTCAAAACAGAGAGGCTGCAAGGAAAAGCCGTCTGAGGAAAAAG GCTTATGTGCAGCAACTAGAGTCAAGTAGATTAAAGCTTAACCAGATAGAA
genomic: GTTTGGCTCAAAACAGAGAGGCTGCAAGGAAAAGCCGTCTGAGGAAAAAGgtgagtccta ... tatggaatagGCTTATGTGCAGCAACTAGAGTCAAGTAGATTAAAGCTTAACCAGATAGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACATTGAGACGTTTGGCTCAAAACAGAGAGGCTGCAAGGAAAAGCCGTCTGAGGAAAAAGgtgagtcctacatatattgttgtacaaattcaactacttgttgagaaataacacttacattgttgcagaaagtggaaactcaaaaggagctttaaatttcactgcattttgtttctgtgtatggaatag
- - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - AAGGAA