1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGGATGAGAAATCTGGAAGTTGGTATTCCCACACTCCTTGAGGAAGGAATCAAGGTGCTTGTGTATGCTGGAGAAGAAGATCTCATATGCAACTGGCTCGgtaaaccagcagctactcaattaatttggaattggaaccaaaatgacatgtcaaagaagagaaattattacatagttctagatcatcaagtagtcatgat...
species | Glycine max |
transcript | GLYMA12G30160.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CAAGGTGCTTGTGTATGCTGGAGAAGAAGATCTCATATGCAACTGGCTCG GGAATTCAAGGTGGGTTAATGCAATGGAGTGGTCTGGTCAAAAACAATTTGEST: gi|21600943|gb|BQ611274.1|BQ611274
genomic: CAAGGTGCTTGTGTATGCTGGAGAAGAAGATCTCATATGCAACTGGCTCGgtaaaccagc ... gattgggcagGGAATTCAAGGTGGGTTAATGCAATGGAGTGGTCTGGTCAAAAACAATTTG
EST: CAAGGTGCTTGTGTATGCTGGAGAAGAAGATCTCATATGCAACTGGCTCG GGAATTCAAGGTGGGTTAATGCAATGGAGTGGTCTGGTCAAAAACAATTTGEST: gi|9819409|gb|BE554922.1|BE554922
genomic: CAAGGTGCTTGTGTATGCTGGAGAAGAAGATCTCATATGCAACTGGCTCGgtaaaccagc ... gattgggcagGGAATTCAAGGTGGGTTAATGCAATGGAGTGGTCTGGTCAAAAACAATTTG
EST: CAAGGTGCTTGTGTATGCTGGAGAAGAAGATCTCATATGCAACTGGCTCG GGAATTCAAGGTGGGTTAATGCAATGGAGTGGTCTGGTCAAAAACAATTTGEST: gi|33389831|gb|CA853038.1|CA853038
genomic: CAAGGTGCTTGTGTATGCTGGAGAAGAAGATCTCATATGCAACTGGCTCGgtaaaccagc ... gattgggcagGGAATTCAAGGTGGGTTAATGCAATGGAGTGGTCTGGTCAAAAACAATTTG
EST: CAAGGTGCTTGNGTATGCTGGAGAANAAGATCTCATATGCAACTGGCTCG GGAATTCAAGGTGGGTTAATGCATTGGAGTAGTCTGGTCAAAAAC
genomic: CAAGGTGCTTGTGTATGCTGGAGAAGAAGATCTCATATGCAACTGGCTCGgtaaaccagc ... gattgggcagGGAATTCAAGGTGGGTTAATGCAATGGAGTGGTCTGGTCAAAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGATGAGAAATCTGGAAGTTGGTATTCCCACACTCCTTGAGGAAGGAATCAAGGTGCTTGTGTATGCTGGAGAAGAAGATCTCATATGCAACTGGCTCGgtaaaccagcagctactcaattaatttggaattggaaccaaaatgacatgtcaaagaagagaaattattacatagttctagatcatcaagtagtcatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG