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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTGGATACTTTTAATACGGCAGTGGTATCTCCCATATATTATGTTATGTTCACTACATTTACCATTGTGGCTAGTGTTATTATGTTTAAGgtaagttttgttacctaactggtatagttagacactgcttcattactctaattttaagattgtataaattgtgttaaaataatccggattgattgtatat...

Basic information

species Glycine max
transcript GLYMA12G28940.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G28940.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv12s0035g00720.t01 (Vitis vinifera), 5'ss of exon 7
GCACTGGATACTTTTAATACGGCAGTGGTATCTCCCATATATTATGTTATGTTCACTACATTTACCATTGTGGCTAGTGTTATTATGTTTAAGgtaagttttgttacctaactggtatagttagacactgcttcattactctaattttaagattgtataaattgtgttaaaataatccggattgattgtatat------
|| || ||||| |||||||| || || ||||||||||| || ||||||||||| ||  || | |||||| |||||||||| || ||||| |||||||   ||  |   | | | | |   |  || |    || |||  |  |    || |||  | |  | | ||||||     || |  | |||  |  |       
GCCCTTGATACATTTAATACAGCCGTTGTATCTCCCATCTACTATGTTATGTTTACATCACTAACCATTTTGGCTAGTGTGATCATGTTCAAGgtaatcctt--tcattgattagaagtttccgaaatccttttattggtgga----tatgataatgtctaatatgttaatggtttctgtttggatgtttcacttcttt

upper sequence: GLYMA12G28940.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ16080 (Selaginella moellendorffii), 5'ss of exon 7
GCACTGGATACTTTTAATACGGCAGTGGTATCTCCCATATATTATGTTATGTTCACTACATTTACCATTGTGGCTAGTGTTATTATGTTTAAGgtaagttttgttacctaactggtatagttagacactgc--ttcattactctaattttaagattgtataaattgtgttaaaataatccggattgattgtatat
||  | |||||||||||||| ||||| ||||||||||| || ||||| ||||| ||  | || || || || ||||| || || ||||| |||||  ||| | |    | |||  |      ||  ||  |  ||  |||  || ||||   | ||||  |                                  
GCGTTAGATACTTTTAATACTGCAGTTGTATCTCCCATTTACTATGTCATGTTTACCTCCTTGACAATCGTAGCTAGCGTCATCATGTTCAAGgttcgttctttctgtttactacttcgccaaggaaccaccattttttatacttattt--ggtttgtccag---------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208319784|gb|GE116829.1|GE116829
EST:     ATGTTATGTTCACTACATTTACCATTGTGGCTAGTGTTATTATGTTTAAG                         GACTGGGATAGACAAAGTCCAACACAAGTTA
genomic: ATGTTATGTTCACTACATTTACCATTGTGGCTAGTGTTATTATGTTTAAGgtaagttttg ... ttgatgtcagGACTGGGATAGACAAAGTCCAACACAAGTTA
EST: gi|208130657|gb|GD932896.1|GD932896
EST:     ATGTTATGTTCACTACATTTACCATTGTGGCTAGTGTTATTATGTTTAAG                         GACTGGGATAGACAAAGTCCAACACAAGTTATCACAGAAATATGTGGGTTT
genomic: ATGTTATGTTCACTACATTTACCATTGTGGCTAGTGTTATTATGTTTAAGgtaagttttg ... ttgatgtcagGACTGGGATAGACAAAGTCCAACACAAGTTATCACAGAAATATGTGGGTTT
EST: gi|208186592|gb|GD982671.1|GD982671
EST:     ATGTTATGTTCACTACATTTACCATTGTGGCTAGTGTTATTATGTTTAAG                         GACTGGGATAGACAAAGTCCAACACAAGTTATCACAGAAATATGTGGGTTT
genomic: ATGTTATGTTCACTACATTTACCATTGTGGCTAGTGTTATTATGTTTAAGgtaagttttg ... ttgatgtcagGACTGGGATAGACAAAGTCCAACACAAGTTATCACAGAAATATGTGGGTTT
EST: gi|192333049|gb|FK024698.1|FK024698
EST:     ATGTTATGTTCACTACATTTACCATTGTGGCTAGTGTTATTATGTTTAAG                         GACTGGGATAGACAAAGTCCAACACAAGTTATCACAGAAATATGTGGGTTT
genomic: ATGTTATGTTCACTACATTTACCATTGTGGCTAGTGTTATTATGTTTAAGgtaagttttg ... ttgatgtcagGACTGGGATAGACAAAGTCCAACACAAGTTATCACAGAAATATGTGGGTTT