Sequence
atgc intronic sequence ATGC exonic sequenceGAATTGTCAGCAAAGACAAAAACCTACTTTGCCACTGCTGTGAACTTATGGGATGCTGATTTCTATGTCAAAGTTGATGATGATGTTCATGTAAATATAGgtattaatagtaaagtttctgataatctcttatgtataaaagcatgagttttatgtttctatagtaaataaccatgatgttgttttaatatgtactgtttgtcttagcattatattctttctgtttcag
Basic information
species | Glycine max |
transcript | GLYMA12G10520.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G10520.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os06g46570.2 (Oryza sativa), 5'ss of exon 7
GAATTGTCAGCAAAGACAAAAACCTACTTTGCCACTGCTGTGAACTTATGGGATGCTGATTTCTATGTCAAAGTTGATGATGATGTTCATGTAAATATAGgtattaatagtaaagtttctgataatctcttatgtataaaagcatgagttttatgtttctatagtaaataaccatgatgttgttttaatatgtactgtttgtcttagcattatattctttctgtttcag
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GAATTGTCTGGCAAAACCAAGACATACTTTGCTACAGCTGTTTCTTTATGGGATGCTGACTTCTATGTGAAGGTTGACGATGATGTGCATGTTAATATAGgt-------gaagtctttgtgttgaacatctgtcctt-----tttaatctgtatggttgtaca--aagtaatctatgtctgactgtcatgtttctttctaaagctcttaatata---------------
upper sequence: GLYMA12G10520.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g38050.1 (Oryza sativa), 5'ss of exon 7
GAATTGTCAGCAAAGACAAAAACCTACTTTGCCACTGCTGTGAACTTATGGGATGCTGATTTCTATGTCAAAGTTGATGATGATGTTCATGTAAATATAGgtattaatagtaaagtttctgataatctcttatgtataaaagcatgagttttatgtttctatagtaaataaccatgatgttgttttaatatgtactgtttgtcttagcattatattctttctgtttcag
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GAATTGGCTGCAAAGACGAAATCGTTCTTTGTGACAGCCTTGTCCATGTGGGATGCAGAGTACTACATTAAAGTGGATGATGATGTACATGTAAATATAGgtgtgcattactac-cctctgat-----ctaacat-catatcccttcattaagtgttttttctgctaa-aattttgat-tagttc--atatattttacttacattaaattt------------------
upper sequence: GLYMA12G10520.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G007185_T01 (Zea mays), 5'ss of exon 7
GAATTGTCAGCAAAGACAAAAACCTACTTTGCCACTGCTGTGAACTTATGGGATGCTGATTTCTATGTCAAAGTTGATGATGATGTTCATGTAAATATAGgtattaa----tagtaaagtttctgataatctcttatgtataaaagcatgagttttatgtttctatagtaaataaccatgatgttgttttaatatgtactgtttgtcttagcattatattctttctgtttcag
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GAGCTGTCAGGGAAAACCAGGACATACTTTGCAACAGCTGTTGCTTTATGGGATGCTAACTTCTATGTGAAGGTTGACGACGATGTACATGTTAATATAGgtattagatttttatgcagtgcctgttattgttgtccttttgctgccggtatgtatttcctttgatag--gatagttacaa-gtggtgccaagaact--tgtttg----------------------------
upper sequence: GLYMA12G10520.1 (Glycine max), 5'ss of exon 7
lower sequence: AT2G32430.1 (Arabidopsis thaliana), 5'ss of exon 7
GAATTGTCAGCAAAGACAAAAACCTACTTTGCCACTGCTGTGAACTTATGGGATGCTGATTTCTATGTCAAAGTTGATGATGATGTTCATGTAAATATAGgtattaatagtaaagtttctgataatctcttatgtataaaagcatgagttttatgtttctatagtaaataaccatgatgttgttttaatatgtactgtttgtcttagcattatattctttctgtttcag
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GAGTTATCAGGCAAAACGAAAACATATTTTTCTACAGCTGTTTCGAAGTGGGATGCAGAGTTCTATGTCAAAGTAGATGATGATGTTCATGTAAATATCGgtaa-gctgaacaatcttcctacattcaatt-tctattt---cccagtttgtatgttgctcacatcaataacgtggtcaattgttttgttgaaaatatctgcag-------------------------
upper sequence: GLYMA12G10520.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G05170.2 (Arabidopsis thaliana), 5'ss of exon 7
GAATTGTCAGCAAAGACAAAAACCTACTTTGCCACTGCTGTGAACTTATGGGATGCTGATTTCTATGTCAAAGTTGATGATGATGTTCATGTAAATATAGgta----ttaatagtaaagtttctgat-aatctcttatgtataaaagcatgagttttatgtttctatagtaaataaccatgatgttgttttaatatgtactgtttgtcttagcattatattctttctgtttcag
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GAGTTGTCAGGCAAGACGAAAACTTACTTTTCTACAGCATTTTCGATGTGGGATGCAGATTTCTATGTCAAAGTAGATGATGATGTTCATGTCAATATAGgtaagttctaaaatcaacgaattgaattggttttctttatgtcattttgcataccttatactggcaatactaatgggttcaatgtttcactgaaatgt-ctgcag-----------------------------
upper sequence: GLYMA12G10520.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv12s0059g00640.t01 (Vitis vinifera), 5'ss of exon 7
GAATTGTCAGCAAAGACAAAAACCTACTTTGCCACTGCTGTGAACTTATGGGATGCTGATTTCTATGTCAAAGTTGATGATGATGTTCATGTAAATATAGgtat-taatagtaaagtttctg--ataatctcttatgtataaaagcatgagttttatgtttctatagtaaataaccatgatgttgttttaatatgtactgtttgtcttagcattatattctttctgtttcag
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GAACTGTCTGCCAAGACAAAGATATATTTTGCTACTGCTGTTGCTTTGTGGGATGCAGAGTTCTACATTAAAGTTGATGATGATGTCCATGTAAATATAGgtatctaatatgttaatctctattatgatttcttttgt------gggtgtcatccataataatctgaaaagtc-ttataatttagttttcctttcttattttagata-------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13181561|gb|BG352901.1|BG352901EST: GGATGCTGATTTCTATGTCAAAGTTGATGATGATGTTCATGTAAATATAG CAACACTGGGAGAAACTCTAGTTAGACATCGATCAAAACCACGGATATACA
genomic: GGATGCTGATTTCTATGTCAAAGTTGATGATGATGTTCATGTAAATATAGgtattaatag ... tctgtttcagCAACACTGGGAGAAACTCTAGTTAGACATCGATCAAAACCACGGATATACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAATTGTCAGCAAAGACAAAAACCTACTTTGCCACTGCTGTGAACTTATGGGATGCTGATTTCTATGTCAAAGTTGATGATGATGTTCATGTAAATATAGgtattaatagtaaagtttctgataatctcttatgtataaaagcatgagttttatgtttctatagtaaataaccatgatgttgttttaatatgtactgtttgtcttagcattatattctttctgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT