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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTCATTATGAAAATGCTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGACCCAGAGACGGACAACTTCTACATGGgtattgatgactagtttcttcttggtttatatctgtatttgagtttaaatgaagaagaatacctttgaggtcccacgcttgactgctgatttttcttgtacag

Basic information

species Glycine max
transcript GLYMA12G07340.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G07340.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g50330.1 (Oryza sativa), 5'ss of exon 6
GTTCTCATTATGAAAATGCTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGACCCAGAGACGGACAACTTCTACATGGgtat-tgatgac----tagtttcttcttggtttatatctgtatttgagtttaaatgaagaagaatacctttgaggtcccacgcttgactg-ctgatttttcttgtacag------------------------------------
||   ||| ||||||||| |||| |||||||||||||| ||||||||||| ||||||||||||||| |  | || || |||||||||||||| | |||||    |  ||| || |      |    | |  ||  |||||| || || |  | |  |||   | |  ||  ||||    ||   |||  || | ||                                     
GTATCCATCATGAAAATGTTGGATCATCCTAATATAGTAAATCTCATTGAAGTGATTGATGACCCAAATGCAGATAAATTCTACATGGgtatgtaatgacattctcattttttttaaaaaaaatagtttccttttgtttaattgtagcatgagatttttcttg-ctaacttttgagcatctttatttaattctccatattattctacctaacattgtccattggtattgccag

upper sequence: GLYMA12G07340.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G057084_T01 (Zea mays), 5'ss of exon 6
GTTCTCATTATGAAAATGCTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGACCCAGAGACGGACAACTTCTACATGGgtattgatgactagtttcttcttggtttatatctgtatttgagtt--taaatgaagaagaatacctttgaggtcccacgcttgactgctgatt--tttcttgtacag------------
||   ||| |||||||||||| | || ||||| || ||||||||  |||| ||||||||||||||| | |  || || ||||||||||||||   | | ||   |     || |  | || | | | |   ||  | |   |  |    | || ||    |      ||  | |||   ||  ||| || | ||             
GTGTCCATAATGAAAATGCTGAATCACCCTAACATTGTCAATCTTGTTGAAGTGATTGATGACCCAAACATAGATAAATTCTACATGGgtat--gtaattatgctgcgactgttaaacatttttttattgattgatgacccatcacattttccgttccattgatgttctcaattgccatttacttttttcttcatttgcattgccag

upper sequence: GLYMA12G07340.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G45240.3 (Arabidopsis thaliana), 5'ss of exon 7
GTTCTCATTATGAAAATGCTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGACCCAGAGACGGACAACTTCTACATGGgtattgatgactagtttcttcttggtttatatctgtatttgagtttaaatgaagaagaatacctttgaggtcccacgcttgactgctgatttttcttgtacag
||| | ||||||||||  ||||| ||||||||||| || |||||||||||||||||||||||||| |||   ||  | || ||||||||||||  |       |||    || ||| ||| |     | |  | || |         | |  ||    |  ||   |  | || || | ||||||||| ||
GTTATGATTATGAAAACCCTGGAGCATCCTAATATCGTTAATCTCATTGAGGTGATTGATGACCCTGAGTTTGATGATTTTTACATGGgtatttct-------ttccctctgctttgtatat---cgttacctcaagtct-------ttctctttgtctgtcatcttatattg-tgttgtttcttgtatag

upper sequence: GLYMA12G07340.1 (Glycine max), 5'ss of exon 7
lower sequence: AT5G60550.1 (Arabidopsis thaliana), 5'ss of exon 7
GTTCTCATTATGAAAATGCTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGACCCAGAGACGGACAACTTCTACATGGgtattgatgactagtttcttcttggtttatatctgtatttgagtttaaatgaagaagaatacctttgaggtcccacgcttgactg-ctgatttttcttgtacag
||| | |||||||||||  |||| |||||||| || || || |||||||||||||| |||||||| || || ||  | || |||||||||| |  | |     ||  ||||   |  | | |  || |    |    ||  |||  |  | ||     |   | || || ||  |||  || || |      
GTTATGATTATGAAAATTTTGGAGCATCCTAACATCGTTAACCTCATTGAGGTGATAGATGACCCTGAAACTGATCATTTTTACATGGgtact--taatctcctttctcttttctactgttttgatatatactctc-tgtggaaagagcctttaatcttataatgcctgtctttctggcttctcctag----

upper sequence: GLYMA12G07340.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0004g02990.t01 (Vitis vinifera), 5'ss of exon 7
GTTCTCATTATGAAAATGCTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGACCCAGAGACGGACAACTTCTACATGGgtattgatgactagtttcttcttggtttatatctgtatttgagttta--aatgaagaagaatacctttgaggtcccacgcttgactgctgatttttcttgtacag----------------------------------------------------
||| | || ||||||||| || | ||||| ||||||||||||||||||||||||||||||||||||   || ||  ||||||| ||||||||| ||  | | ||||||     | | | | || ||||      |  ||   |   || ||  | ||    ||    ||||  ||  |||||| ||| |  |                                                     
GTTTTGATCATGAAAATGTTGAACCATCCAAATATAGTCAATCTCATTGAGGTGATTGATGACCCAAGCACAGATCACTTCTATATGGgtatttattgccactttctttcccttctttgtatgcattttttcccatcaaattatgtgattaagtatgttaaccttttcttgcatgaagattttactttttaaaaattagcaggttaatttactgtttgactgcaaattcatttttttttcttcag