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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGTTTGATTATCATAGGCAGCACGGAATCGgtaattccttatcttttctccttggcaacatctcattgttgagggcacaaacagtagaagttttgcactgccgttaactaataagcaataactcaatgtgatgcttattttcattttttttctctcag

Basic information

species Glycine max
transcript GLYMA12G06980.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G06980.3 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G382038_T01 (Zea mays), 5'ss of exon 9
GAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGTTTGATTATCATAGGCAGCACGGAATCGgtaattccttatcttttctccttggcaacatctcattgttgagggcaca-aacagtagaagttttgcactg-ccgttaactaataagcaataactcaatgtgatgcttattttcattttttttctctcag
| ||| ||||||||||||||||||| |||||||| ||||| |  ||||||||||| ||||| |||||||| || || |||||  | | ||||||           | |  ||| | ||    || || | |  |    ||| ||   |  |  |   || || |    |  ||  |     |  ||||  ||  | | | |       
GTGTTAGGAGTTGTTATGATGAGGGTAAGCGTGTAGCAGAGATGTTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaacacttcatctttcactt------aaacttcaatattagtagctcatagccctctttgttatgtgataactctgggcttatgatttttttcttgaca--gtatttatcatctatgtctgtag-----

upper sequence: GLYMA12G06980.3 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G177373_T02 (Zea mays), 5'ss of exon 8
GAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGTTTGATTATCATAGGCAGCACGGAATCGgtaattccttatcttttctccttggcaacatctcattgttgagggcaca-aacagtagaagttttgcactg-ccgttaactaataagcaataactcaatgtgatgcttattttcattttttttctctcag
| ||| ||||||||||||||||||| |||||||| ||||| |  ||||||||||| ||||| |||||||| || || |||||  | | ||||||           | |  ||| | ||    || || | |  |    ||| ||   |  |  |   || || |    |  || || |   |  ||||  ||  | | | |       
GTGTTAGGAGTTGTTATGATGAGGGTAAGCGTGTAGCAGAGATGTTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaacacttcatctttcactt------aaacttcaatattagtagctcatagccctctttgttatgtgataactctgggcttatgatttttttcttaacg--gtatttatcatctatgtctgtag-----

upper sequence: GLYMA12G06980.3 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G300412_T01 (Zea mays), 5'ss of exon 14
GAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGTTTGATTATCATAGGCAGCACGGAATCGgtaattccttatcttttctccttggcaacatctcattgttgagggcacaaacagtagaagttttgcactgccgttaactaataagcaataactcaatgtgatgcttattttcattttttttctct-cag
| ||| ||||||||||||||||||| |||||||| || || || ||||||||||| ||||| | |||||| || || |||||  | | ||||||           | |  ||| | ||    || ||   |||      ||||   ||  | |||||        || | |   | |  |     | || ||  | | | |||  ||
GTGTTAGGAGTTGTTATGATGAGGGTAAGCGTGTAGCTGAGACGTTGATGTTTGACTATCACAAGCAGCATGGCATTGgtaacacttcatctttcactt------aaacttcaatattagtagctca--tagtcct--ctttgttatgt-gataactctgggcttatgattttttttcttaacagtgtttatcatctatgtctgtag

upper sequence: GLYMA12G06980.3 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G165357_T02 (Zea mays), 5'ss of exon 7
GAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGTTTGATTATCATAGGCAGCACGGAATCGgtaattccttatcttttctccttggcaacatctcattgttgagggcacaaacagtagaagttttgcactgccgttaactaataagcaataactcaatgtgatgcttattttcattttttttctctcag
| ||| ||||||||||||||||||| |||||||| ||||| ||  ||||||| || ||||| |||||||| || || |||||  | | ||||||           | |  ||| | ||    || ||     |||   | ||        | |||||        || | |   | | |    |||||    | | | ||| |   
GTGTTAGGAGTTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGTTCGACTATCACAGGCAGCATGGCATTGgtaacacttcatctttcactt------aaacttcaatattagtagctca-----tagccctctttgttatgtgataactctgggcttatgattttttattaacagtatttatcatctatgtctgtag-

upper sequence: GLYMA12G06980.3 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G157772_T01 (Zea mays), 5'ss of exon 5
GAGTTC-GGAGTTGTTATGATGAGGGCAAGCGTGTTGCA-GAAACTTTGATGTTTGATTATCATAGGCAGCACGGAATCGgtaattccttatcttttctccttggcaacatctcattgttgagggcaca-aacagtagaagttttgc-actgccgttaactaataagcaataactcaatgtgatgcttattttcattttttttctctcag
| |||  ||||||||||||||||||| |||||||| ||| || || |||||||| || ||||| |||||||| || || |||||  | | ||||||           | |  ||| | ||    || || | |  |    ||| ||  |   |  |   || || |    |  || ||     |  ||||  ||  | | | |       
GTGTTTAGGAGTTGTTATGATGAGGGTAAGCGTGTAGCAAGAGACGTTGATGTTCGACTATCACAGGCAGCATGGCATTGgtaacacttcatctttcactt------aaacttcaatattagtagctcatagccctctttgttatgagataactctgggcttatgatttttttcttaaca--gtatttatcatctatgtctgtag-----

upper sequence: GLYMA12G06980.3 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G044027_T02 (Zea mays), 5'ss of exon 8
GAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGTTTGATTATCATAGGCAGCACGGAATCGgtaattccttatctttt--ctccttggcaacatctcattgttgagggcacaaaca-gtagaagttttgcactgccgttaactaataagcaataactcaatgtgatgcttattttcattttttttctctcag
||||  |||| |||||||||||||| |||||||| ||||| ||  ||||||| || ||||| |||||||| || || |||||| | | |||||     |     | || ||    |  | |    |   |    ||   |  | |   ||   | |   |  | |||||||  |  |    |||  | |                    
GAGTCAGGAGCTGTTATGATGAGGGTAAGCGTGTAGCAGAGACGCTGATGTTCGACTATCACAGGCAGCATGGCATTGgtaatacttcatcttgcacttaaactgtaatattagctcatagccctctttattgtgtgataactctaggcttatgatttgtcctcagcaatatttataatctatgtctgtag------------------

upper sequence: GLYMA12G06980.3 (Glycine max), 5'ss of exon 8
lower sequence: AT5G59290.2 (Arabidopsis thaliana), 5'ss of exon 7
GAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGTTTGATTATCATAGGCAGCACGGAATCGgtaattccttatcttttct----ccttggcaacatctcattgttgagggcacaaacagtagaagttttgcactgccgttaactaataagcaataactcaatgtgatgcttattttcattttttttctctcag
| ||||||||||| ||||| || |||||||| || || ||||| ||||||||||| || || || || || || || ||| | |  |   |||  ||     |   ||| ||  |  || || |       |    |  ||| ||  || ||  |     |  | |    ||                                      
GGGTTCGGAGTTGCTATGACGAAGGCAAGCGGGTAGCCGAAACCTTGATGTTTGACTACCACAGACAACATGGCATTGgtcagttttctacttccctaaactcactgcatcacttttttctttatccagtgattcctttaagattctcattg--gcctgtttgtcatttgtag-------------------------------------

upper sequence: GLYMA12G06980.3 (Glycine max), 5'ss of exon 8
lower sequence: AT3G46440.1 (Arabidopsis thaliana), 5'ss of exon 7
GAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGTTTGATTATCATAGGCAGCACGGAATCGgtaattccttatcttttctccttggcaacatctcattgttgagggcacaaacagtagaagttttgcactgccgttaactaataagcaataactcaatgtgatgcttattttcattttttttctctcag
| ||| |||| ||||||||||| |||||||||||||| || || ||||||||||| || || ||||| || ||||| |||||    ||   ||||||      ||   ||||  |  | |     |   | |||     ||||||    | |   || ||   |  | | ||  |       || ||||  ||| || | | |   
GTGTTAGGAGCTGTTATGATGAAGGCAAGCGTGTTGCTGAGACCTTGATGTTTGACTACCACAGGCAACATGGAATTGgtaag---ttgcattttct------caggctctcgct--tcaactttctccctgtaa----tttgcatcaacatattctcattgtcctttattcctta----aattgtttttgtttcttctttgtag-

upper sequence: GLYMA12G06980.3 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 8
GAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGTTTGATTATCATAGGCAGCACGGAATCGgtaattcct-tatcttttctccttggcaacatctcattgttgagggcacaaacagtagaagttt-tgcactgccgttaactaataagcaataactcaatgtgatgcttattttcattttttttctctcag
| || ||||| || ||||||||||| |||||||| || || |||||||||||||||||||||||||| || || || ||||| |  | | | |||| |  |   |   | |  | |     |   |  ||   |  |  | | ||   |  | |||  |  |   ||                                         
GTGTGCGGAGCTGCTATGATGAGGGGAAGCGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAACATGGGATAGgtaacttttgtgtttttttttttaatcctgaacaaacttcaatgaatatgaagttttaatatgtatgttgtttctttatattttggacag----------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213606684|gb|DB959073.1|DB959073
EST:     GCGTGTTGCAGAAACTTTGATGTTTGATTATCATAGGCAGCACGGAATCG                         AAATACGCATTGCGAGAATCTTTAACACATATGGACCACGCATGAATATTG
genomic: GCGTGTTGCAGAAACTTTGATGTTTGATTATCATAGGCAGCACGGAATCGgtaattcctt ... tttctctcagAAATACGCATTGCGAGAATCTTTAACACATATGGACCACGCATGAATATTG
EST: gi|209703510|gb|BW656548.1|BW656548
EST:     GCGTGTTGCAGAAACTTTGATGTTTGATTATCATAGGCAGCACGGAATCG                         AAATACGCATTGCGAGAATCTTTAACACATATGGACCACGCATGAATATTG
genomic: GCGTGTTGCAGAAACTTTGATGTTTGATTATCATAGGCAGCACGGAATCGgtaattcctt ... tttctctcagAAATACGCATTGCGAGAATCTTTAACACATATGGACCACGCATGAATATTG