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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTTGCTTACATCTACTTCAGAAGTATATGGGGACCCTCTTGAGCATCCACAACCAGAAAGCTATTGGGGCAATGTTAATCCTATTGgtacatacacatctcattctcaatccaaacttgtgtatcaacggcatcataatggggacaatgctaatttagctgagctcatcataatgttaacctcaat...

Basic information

species Glycine max
transcript GLYMA12G06980.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G06980.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 7
GATTTTGCTTACATCTACTTCAGAAGTATATGGGGACCCTCTTGAGCATCCACAACCAGAAAGCTATTGGGGCAATGTTAATCCTATTGgtacatacacatctcattctcaatccaaacttgtgtatcaacggcatcataatggggacaatgctaatttagctgagctcatcataatgttaacctcaat
||| ||||||||||| ||||||||||||||||| || |||||||||||||| ||| | || ||||||||||| |||||||| || || ||||  | ||  | ||||  |      |   |||| | | |     |  | ||    |  || |  ||   |     |   ||   |     || ||| ||
GATATTGCTTACATCAACTTCAGAAGTATATGGAGATCCTCTTGAGCATCCCCAAACTGAGAGCTATTGGGGAAATGTTAACCCAATAGgtatttgcatctttcatggttttcttaggtttgttttttatttaaaaaaaaaaaaaggaaaagaaaagaaaagaaggaaaataggatgaaaaatctctat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209703509|gb|BW656547.1|BW656547
EST:     TCTTGAGCATCCACAACCAGAAAGCTATTGGGGCAATGTTAATCCTATTG                         GAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGT
genomic: TCTTGAGCATCCACAACCAGAAAGCTATTGGGGCAATGTTAATCCTATTGgtacatacac ... gtgtgcacagGAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGT
EST: gi|192298392|gb|FG989143.1|FG989143
EST:     TCTTGAGCATCCACAACCAGAAAGCTATTGGGGCAATGTTAATCCTATTG                         GAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTTGATG
genomic: TCTTGAGCATCCACAACCAGAAAGCTATTGGGGCAATGTTAATCCTATTGgtacatacac ... gtgtgcacagGAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTT-GATG
EST: gi|193540711|gb|FK494361.1|FK494361
EST:     TCTTGAGCATCCACAACCAGAAAGCTATTGGGGCAATGTTAATCCTATTG                         GAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGT
genomic: TCTTGAGCATCCACAACCAGAAAGCTATTGGGGCAATGTTAATCCTATTGgtacatacac ... gtgtgcacagGAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGT
EST: gi|209703510|gb|BW656548.1|BW656548
EST:     TCTTGAGCATCCACAACCAGAAAGCTATTGGGGCAATGTTAATCCTATTG                         GAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGT
genomic: TCTTGAGCATCCACAACCAGAAAGCTATTGGGGCAATGTTAATCCTATTGgtacatacac ... gtgtgcacagGAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGT
EST: gi|192330026|gb|FK020842.1|FK020842
EST:     TCTTGAGCATCCACAACCAGAAAGCTATTGGGGCAATGTTAATCCTATTG                         GAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGT
genomic: TCTTGAGCATCCACAACCAGAAAGCTATTGGGGCAATGTTAATCCTATTGgtacatacac ... gtgtgcacagGAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGT