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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCACCTTTGGGTTGGCAAGATACTGCAGCATATCTTGTTTTACCTATTCTTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAGgtaaacacatcagttctcctctgtttctttttcttttttttggtgttaacaaactaaatgacttcttttgacag

Basic information

species Glycine max
transcript GLYMA12G06920.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G06920.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0004g04460.t01 (Vitis vinifera), 5'ss of exon 7
TCCACCTTTGGGTTGGCAAGATACTGCAGCATATCTTGTTTTACCTATTCTTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAGgtaaa---cacatcagttctcc--tctgtttctttttctttt-ttttggtgttaacaaa-ctaaatgacttcttttgacag
|||||| ||||| |||||||| ||||||||||| |||||||||||| | || |||||| ||||||| || |||||||||||  | ||||| ||||||||||||||    |  ||  || ||   ||  |||||| |  |||| |||   |  ||  |||  |   |   || ||||| |||
TCCACCATTGGGCTGGCAAGACACTGCAGCATACCTTGTTTTACCTGTCCTCCTTGTCATTTCTCAGTATGTTTCAATGGAGCTGATGAAGCCACCTCAGgtaaagaataagtctattttctgatcattttcttctctttttgtttcattcctagtaaaattgggtttttttttttggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23064105|gb|BU578878.1|BU578878
EST:     TTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAG                         ACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTC
genomic: TTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAGgtaaacacat ... cttttgacagACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTC
EST: gi|193525562|gb|FK478393.1|FK478393
EST:     CTTTGTTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAG                         ACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTC
genomic: C-TTG-TCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAGgtaaacacat ... cttttgacagACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTC
EST: gi|5760152|gb|AI965515.1|AI965515
EST:     TTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAG                         ACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTC
genomic: TTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAGgtaaacacat ... cttttgacagACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTC
EST: gi|10233625|gb|BE802513.1|BE802513
EST:     TTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAG                         ACAGATCCTTCTCAAAAGAATCAACTTCTTATTCTAAAGTTTCTTCCACTC
genomic: TTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAGgtaaacacat ... cttttgacagACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTC
EST: gi|10844370|gb|BF067669.1|BF067669
EST:     TTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAG                         ACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTC
genomic: TTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAGgtaaacacat ... cttttgacagACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTC
EST: gi|120493132|gb|EH221299.1|EH221299
EST:     TTCAATGGGAAATCATGAAACCACTTCAG                         ACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTC
genomic: TTCAAT-GGAAATCATGAAACCACCTCAGgtaaacacat ... cttttgacagACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTC
EST: gi|7926267|gb|AW832293.1|AW832293
EST:     TTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAG                         ACAAGACCCTTCTCAAAAGAATCAACTTCTTATTTTAAA
genomic: TTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAGgtaaacacat ... cttttgacagACA-GATCCTTCTCAAAAGAATCAACTTCTTATTTTAAA