Sequence
atgc intronic sequence ATGC exonic sequenceCAAAGCGATCTGAGATCGTCCAACGCCGAATACGCAGGCCTTTTTCTGTAGATGAAGTAGAAGCACTGGTTCAAGCAGTCGAAAAACTAGGAACTGGAAGgtaagatttacattagacttggtttgacttgacaattatatttagtgggttgtgtgtgtactccgtcttgttgctagtattgtgggtgtatataattgtc...
Basic information
species | Glycine max |
transcript | GLYMA12G06680.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G06680.1 (Glycine max), 5'ss of exon 7
lower sequence: AT5G59430.2 (Arabidopsis thaliana), 5'ss of exon 8
CAAAGCGATCTGAGATCGTCCAACGCCGAATACGCAGGCCTTTTTCTGTAGATGAAGTAGAAGCACTGGTTCAAGCAGTCGAAAAACTAGGAACTGGAAGgtaagatttacattagacttggtttgacttgacaattatatttagtgggttgtgtgtgtactccgtcttgttgctagtattgtgggtgtatataattgtc
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AGCAGCAGCAGCAGGCTGCACAACGCAGAATTCGTCGACCTTTCTCAGTTGCTGAAGTAGAAGCACTTGTTCAAGCAGTTGAGAAACTCGGTACTGGAAGgtaaaaaa-acactaatacaagtcatatagtgttggcttatttg--tgattgtgaatagaagaaga--tgatgattaaagtttgg-tgaaaactgtag--
upper sequence: GLYMA12G06680.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G46590.1 (Arabidopsis thaliana), 5'ss of exon 8
CAAAGCGATCTGAGATCGTCCAACGCCGAATACGCAGGCCTTTTTCTGTAGATGAAGTAGAAGCACTGGTTCAAGCAGTCGAAAAACTAGGAACTGGAAGgtaagatttacattagacttggtttgacttgacaattatatttagtgggttgtgtgtgtactccgtcttgttgctagtattgtgggtgtatataattgtc
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CTGAGCAGCAGCTAGCTGCACAACGCAGAATTCGTCGACCTTTCTCAGTTACTGAAGTAGAAGCACTGGTCCAAGCCGTTGAGAAACTCGGAACCGGAAGgtacaaaacaaagaaatagcactttctcttcttcat-gttgctgacaaaatgtgtttgaaaactacag--------------------------------
upper sequence: GLYMA12G06680.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0004g04940.t01 (Vitis vinifera), 5'ss of exon 8
CAAAGCGATCTGAGATCGTCCAACGCCGAATACGCAGGCCTTTTTCTGTAGATGAAGTAGAAGCACTGGTTCAAGCAGTCGAAAAACTAGGAACTGGAAGgtaagattta-----cattagacttggtttgacttgacaattatatttagtgggttgtgtgtgtactccgtcttgttgctagtattgtgggtgtatataattgtc
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CCAAGCGATCTGAGATTGTGCAACGTCGAATTCGTCGACCTTTTTCTGTTTCTGAAGTGGAGGCACTAGTTCAAGCAGTCGAGAAACTTGGAACTGGAAGgtattttttatgaaacacaactctggaagttgtttgatactgcaattgaagtggctaaaaccg--ctaaaaccaatgttcagttgtgtgaaggcaaaagacg---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|214004175|gb|DB989292.1|DB989292EST: GATGAAGTAGAAGCACTGGTTCAAGCAGTCGAAAAACTAGGAACTGGAAG GTGGCGAGATGTTAAGGTTTGTGCTTTTGATAATGCAAAGCATCGGACATA
genomic: GATGAAGTAGAAGCACTGGTTCAAGCAGTCGAAAAACTAGGAACTGGAAGgtaagattta ... atacaatcagGTGGCGAGATGTTAAGGTTTGTGCTTTTGATAATGCAAAGCATCGGACATA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAAAGCGATCTGAGATCGTCCAACGCCGAATACGCAGGCCTTTTTCTGTAGATGAAGTAGAAGCACTGGTTCAAGCAGTCGAAAAACTAGGAACTGGAAGgtaagatttacattagacttggtttgacttgacaattatatttagtgggttgtgtgtgtactccgtcttgttgctagtattgtgggtgtatataattgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgggtg