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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAACCTAACGTTCATACCTATGGAGCACTTATTGGTGGTTGTGCTAGAGCTGGGCAAGTTGCTAAAGCATTTGGTGCTTATGGAATTATGAGGTCAAAGgtacaattattgcaacttgtatttctaaagaactatattcacagtggtatgagttgagttcctcccagttttttttaattgtacatgctgatgtgatgtttaatgcagtag

Basic information

species Glycine max
transcript GLYMA12G03760.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G03760.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os10g10170.2 (Oryza sativa), 5'ss of exon 5
GGAACCTAACGTTCATACCTATGGAGCACTTATTGGTGGTTGTGCTAGAGCTGGGCAAGTTGCTAAAGCATTTGGTGCTTATGGAATTATGAGGTCAAAGgtacaattattg-caacttgtatttctaaagaac------tatattcaca-gtggtatgagt--------tgagttcctccca---gttttttttaattgtacatgctgatgtgatgtttaatgcagtag
 || || || ||| | || ||| | ||||| |||| ||| ||||| | |||||| ||||| || |||||||||||||||||||| || ||||| ||||||||  | |  | |  |  || | ||| || |  ||      |  ||||||  ||| |   | |        ||| |  || | |   | |||   |  ||||  |   |  || |   |    ||||||||
AGAGCCAAATGTTAACACATATAGTGCACTGATTGATGGCTGTGCAAAAGCTGGTCAAGTAGCAAAAGCATTTGGTGCTTATGGTATCATGAGTTCAAAGgtgaagtggtagatattttttctttttatattacatgtcttccattcacctgtgctgcaaatgctactggtgaatcacttctatgcgctttccatgtttgttgaacttactgggccatact-tgcagtag

upper sequence: GLYMA12G03760.1 (Glycine max), 5'ss of exon 7
lower sequence: AT4G34830.1 (Arabidopsis thaliana), 5'ss of exon 7
GGAACCTAACGTTCATACCTATGGAGCACTTATTGGTGGTTGTGCTAGAGCTGGGCAAGTTGCTAAAGCATTTGGTGCTTATGGAATTATGAGGTCAAAGgtacaattattgcaa-cttgtatttctaaagaac-tatattcacagtggtatgagt--tgagttcctcc-------cagttttttttaattgta--catgctgatgtgatgtttaatgcagtag---------------------------------------------
|||| | ||  |||| || | ||| |||||||||| ||| |||||||||||||| ||||| ||||| ||||||||||| ||||||||| | ||||| ||||||    |    |||  ||| ||  |     | | | | || | | |   |  | |      || || |       |||||||||||  || ||    |||| || || |  ||  |||  | |                                             
GGAAGCCAATCTTCACACATTTGGTGCACTTATTGATGGCTGTGCTAGAGCTGGACAAGTAGCTAAGGCATTTGGTGCGTATGGAATTTTAAGGTCTAAGgtaagcatgccacaagtttggatgccctcctatcatgtgtttagatttcaaaaaataccctatttcttcatggctacagttttttttttttttaattctgcttatatgttcatttctgctttggaatctcaaatcaattattacattgatgacatgttcgatgcagtag

upper sequence: GLYMA12G03760.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv03s0038g01320.t01 (Vitis vinifera), 5'ss of exon 7
GGAACCTAACGTTCATACCTATGGAGCACTTATTGGTGGTTGTGCTAGAGCTGGGCAAGTTGCTAAAGCATTTGGTGCTTATGGAATTATGAGGTCAAAGgtacaattattgcaacttgtatttctaaagaactatattcacagtggtatgagttg----agttcctcccagttttttttaatt-------gtacatgctgatgtgatgtttaatgcagtag----------------------------------------------------
|||||| || |||||||| ||||| |||||||||| |||||||| ||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||  ||| | |  | | |  |||||||    || | ||  || |  | |   | |    | |   | |  || | |  || ||       | |||| |     || |  ||  |||    |                                                    
GGAACCAAATGTTCATACATATGGTGCACTTATTGATGGTTGTGGTAGAGCTGGACAAGTTGCTAAGGCATTTGGTGCTTATGGAATAATGAGGTCCAAGgtatgattttagtca-tagattttctaatctcctttgttagcacttttctttttcgttccaatgatttcatgtctatggtagtttgtacaagaacatcccagcttgttcatttttgcttctgcattttgaatattaaataagtttcaaactgataagatgttgatatgcagtag